Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
target gene predictions
36
chromatin state
33
candidate regulatory elements
10
accessible chromatin
2
eQTL
2
gene expression
1
binding sites
Date released
65
September, 2022
February, 2021
7
June, 2020
3
August, 2017
3
November, 2021
2
January, 2022
2
March, 2024
1
February, 2024
1
October, 2022
Available data
47
bed bed3+
33
bed bed9
3
bigWig
2
tsv
Organism
84
Homo sapiens
Biosample type
68
tissue
13
cell line
3
primary cell
Organ
633
epithelium
389
kidney
280
brain
271
connective tissue
204
pancreas
203
musculature of body
186
vasculature
163
lung
158
heart
145
intestine
143
blood vessel
137
limb
109
liver
92
skin of body
87
bodily fluid
84
large intestine
83
eye
82
blood
78
embryo
77
extraembryonic component
60
stomach
53
adipose tissue
52
artery
43
small intestine
40
mammary gland
38
adrenal gland
38
placenta
37
bone element
34
prostate gland
33
ureter
27
gonad
26
lymph node
25
esophagus
25
penis
25
spinal cord
24
thymus
19
nerve
16
spleen
15
uterus
14
testis
13
lymphatic vessel
13
lymphoid tissue
13
thyroid gland
12
ovary
12
vein
11
mouth
8
bronchus
7
breast
6
skeleton
6
tongue
6
urinary bladder
6
vagina
5
bone marrow
3
nose
2
pituitary gland
1
pericardium
1
trachea
Project
81
AMP
3
ENCODE
Genome assembly (visualization)
80
hg19
38
GRCh38
month_released!
February, 2021
annotation_type!
target gene predictions
BIOSAMPLE
TYPE
84 results
search-icon
table-tab-icon
Clear Filters
chromatin state
candidate regulatory elements
accessible chromatin
eQTL
gene expression
binding sites
tissue
large intestine
13
13
1
sigmoid colon
5
5
1
transverse colon
4
4
1
1
colonic mucosa
3
2
mucosa of rectum
3
2
+ See 5 more…
cell line
HT-29
1
1
1
SW480
1
1
1
HCT-116 cell
1
1
HCT116
1
1
colon epithelial cell
1
1
+ See 1 more…
primary cell
colon epithelial cell
3
See all biosamples
Download