Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
969
histone modifications
861
accessible chromatin
815
binding sites
791
candidate regulatory elements
678
gene expression
520
target gene predictions
166
differential activity
166
eQTL
131
variant allelic effects
72
chromatin state
65
Fine-mapped variants
8
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2532
February, 2021
September, 2022
386
May, 2021
378
February, 2024
333
November, 2021
286
September, 2023
282
June, 2020
145
May, 2020
128
August, 2021
119
March, 2020
104
January, 2022
101
October, 2022
82
January, 2020
70
March, 2023
58
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
August, 2017
February, 2023
29
March, 2024
19
April, 2020
14
October, 2019
12
November, 2019
9
August, 2018
8
April, 2019
7
May, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4096
bed bed3+
882
tsv
509
bigWig
108
txt
34
bed bed9+
32
bed bed9
32
bigBed bed9
24
csv
15
bigBed narrowPeak
Organism
5219
Homo sapiens
Biosample type
1973
primary cell
1800
cell line
1129
tissue
360
in vitro differentiated cells
3
stem cell
Organ
783
epithelium
427
kidney
332
connective tissue
280
brain
229
pancreas
186
vasculature
168
musculature of body
144
heart
141
bodily fluid
139
blood vessel
136
blood
133
embryo
121
intestine
107
liver
limb
101
skin of body
100
lung
73
large intestine
71
uterus
63
adipose tissue
58
eye
51
artery
49
stomach
47
bone element
47
extraembryonic component
44
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
26
gonad
26
small intestine
25
placenta
25
ureter
24
esophagus
19
spinal cord
16
nerve
16
spleen
16
thymus
16
vein
15
lymphatic vessel
14
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bone marrow
10
bronchus
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
nose
1
pericardium
Project
4558
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
4292
hg19
994
GRCh38
4
hg18
month_released!
February, 2023
September, 2022
August, 2017
organ_slims!
limb
nose
BIOSAMPLE
TYPE
5266 results
search-icon
table-tab-icon
Clear Filters
histone modifications
accessible chromatin
binding sites
candidate regulatory elements
gene expression
target gene predictions
differential activity
eQTL
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
86
18
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
30
4
7
3
5
1
endothelial cell
1
15
2
9
7
1
2
1
hepatocyte
4
8
1
13
2
2
fibroblast
16
1
4
2
6
+ See 439 more…
cell line
HeLa-S3
1
2
52
H1-hESC
1
1
2
8
38
EndoC_BH1
1
8
1
8
1
2
1
K562
1
1
2
1
17
breast cancer cell
11
9
+ See 744 more…
tissue
islet of Langerhans
1
5
2
11
1
13
1
1
2
2
2
kidney
2
10
1
15
7
1
1
2
heart
1
5
1
18
3
1
2
2
stomach
1
3
21
1
2
1
liver
2
4
1
6
1
3
1
7
1
+ See 234 more…
in vitro differentiated cells
neural progenitor cell
15
10
1
7
1
embryonic stem cell
1
6
1
1
5
adipocyte
1
4
1
2
1
4
hematopoietic multipotent progenitor cell
1
1
1
9
1
cardiomyocytes
11
+ See 118 more…
stem cell
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download