Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
971
histone modifications
858
accessible chromatin
837
candidate regulatory elements
811
binding sites
607
gene expression
349
target gene predictions
162
differential activity
162
eQTL
106
chromatin state
84
variant allelic effects
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
September, 2022
389
May, 2021
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
155
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
3
November, 2020
3
September, 2018
January, 2018
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
3952
bed bed3+
829
tsv
504
bigWig
108
txt
40
bigBed bed9
36
bed bed9
34
bed bed9+
4
bigBed narrowPeak
1
bam
Organism
5010
Homo sapiens
Biosample type
1830
primary cell
1642
cell line
1247
tissue
333
in vitro differentiated cells
4
stem cell
Organ
722
epithelium
426
kidney
319
connective tissue
285
brain
207
pancreas
174
vasculature
156
musculature of body
142
heart
129
blood vessel
119
intestine
115
bodily fluid
110
blood
106
limb
101
skin of body
100
lung
83
embryo
81
eye
81
liver
73
large intestine
62
adipose tissue
54
artery
48
stomach
47
bone element
47
extraembryonic component
44
mammary gland
38
lymph node
38
prostate gland
34
penis
30
adrenal gland
27
small intestine
26
gonad
25
placenta
25
ureter
22
esophagus
20
uterus
19
spinal cord
17
vein
16
nerve
16
spleen
16
thymus
15
lymphatic vessel
14
testis
13
pituitary gland
11
ovary
10
bone marrow
10
thyroid gland
9
bronchus
9
skeleton
8
lymphoid tissue
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Project
4352
AMP
333
ENCODE
281
KPMP
59
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
4146
hg19
816
GRCh38
4
hg18
month_released!
January, 2018
September, 2022
February, 2024
BIOSAMPLE
TYPE
5058 results
search-icon
table-tab-icon
Clear Filters
histone modifications
accessible chromatin
candidate regulatory elements
binding sites
gene expression
target gene predictions
differential activity
eQTL
chromatin state
variant allelic effects
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
86
18
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
30
4
7
3
5
1
endothelial cell
1
14
2
8
7
2
macrophage
12
2
3
7
1
fibroblast
16
1
4
2
+ See 430 more…
cell line
EndoC_BH1
1
8
1
8
1
3
1
breast cancer cell
11
9
H1-hESC
1
1
2
8
1
lymphoblastoid cell line
3
1
2
6
neuroblastoma cell
8
4
+ See 739 more…
tissue
islet of Langerhans
1
5
2
10
1
12
3
1
2
2
2
kidney
2
10
15
1
7
1
2
1
heart
1
5
18
1
3
1
2
2
retina
1
23
3
1
1
1
1
stomach
1
3
21
1
2
1
+ See 245 more…
in vitro differentiated cells
neural progenitor cell
15
10
1
7
1
adipocyte
1
3
2
1
1
4
4
embryonic stem cell
1
6
1
1
5
hematopoietic multipotent progenitor cell
1
1
9
1
1
cardiomyocytes
11
+ See 114 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download