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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
964
histone modifications
851
accessible chromatin
807
binding sites
751
candidate regulatory elements
520
target gene predictions
480
gene expression
123
variant allelic effects
111
differential activity
106
chromatin state
74
Fine-mapped variants
67
eQTL
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2395
February, 2021
September, 2022
388
May, 2021
377
February, 2024
330
November, 2021
273
June, 2020
146
September, 2023
134
May, 2020
124
March, 2020
January, 2022
100
August, 2021
98
October, 2022
73
January, 2020
70
March, 2023
56
January, 2021
55
February, 2020
49
May, 2022
44
November, 2022
34
August, 2017
32
February, 2023
27
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
8
May, 2019
7
April, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4068
bed bed3+
648
tsv
501
bigWig
36
bigBed bed9
34
bed bed9+
32
bed bed9
24
csv
21
txt
15
bigBed narrowPeak
1
bam
Organism
4843
Homo sapiens
Biosample type
1778
cell line
1651
primary cell
1095
tissue
361
in vitro differentiated cells
4
stem cell
Organ
798
epithelium
kidney
334
connective tissue
268
brain
229
pancreas
188
vasculature
170
musculature of body
144
heart
143
bodily fluid
141
blood vessel
138
blood
134
embryo
122
intestine
109
liver
104
limb
100
lung
99
skin of body
82
eye
74
large intestine
70
uterus
62
adipose tissue
51
artery
49
stomach
47
bone element
46
extraembryonic component
45
mammary gland
38
lymph node
38
prostate gland
34
penis
30
adrenal gland
26
small intestine
25
ureter
24
placenta
23
gonad
21
esophagus
18
spinal cord
vein
16
thymus
15
lymphatic vessel
15
nerve
15
spleen
12
pituitary gland
12
testis
10
bone marrow
10
bronchus
10
ovary
10
thyroid gland
9
lymphoid tissue
9
skeleton
6
breast
6
mouth
5
trachea
4
tongue
4
urinary bladder
3
vagina
1
nose
1
pericardium
Project
4325
AMP
330
ENCODE
141
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
4271
hg19
895
GRCh38
4
hg18
month_released!
January, 2022
September, 2022
organ_slims!
kidney
vein
BIOSAMPLE
TYPE
4891 results
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Clear Filters
histone modifications
accessible chromatin
binding sites
candidate regulatory elements
target gene predictions
gene expression
variant allelic effects
differential activity
chromatin state
Fine-mapped variants
eQTL
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
1
2
52
H1-hESC
1
1
2
38
8
EndoC_BH1
1
8
1
1
8
1
3
K562
1
1
2
1
17
1
breast cancer cell
11
9
+ See 733 more…
primary cell
monocyte
86
18
1
2
15
1
2
1
1
CD8-positive, alpha-beta T cell
30
4
7
5
3
1
endothelial cell
1
15
2
7
9
2
1
2
hepatocyte
4
8
1
2
13
2
fibroblast
16
1
4
6
+ See 367 more…
tissue
islet of Langerhans
1
5
2
1
11
1
3
2
10
2
2
heart
1
5
1
18
1
3
2
2
retina
1
23
1
3
1
1
1
stomach
1
3
21
2
1
liver
2
4
1
6
3
1
1
2
6
1
+ See 229 more…
in vitro differentiated cells
neural progenitor cell
15
10
1
1
7
adipocyte
1
4
1
2
4
1
4
embryonic stem cell
1
6
1
1
5
hematopoietic multipotent progenitor cell
1
1
1
9
1
cardiomyocytes
11
+ See 118 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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