Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1313
target gene predictions
977
histone modifications
913
accessible chromatin
816
binding sites
672
gene expression
169
eQTL
167
differential activity
140
variant allelic effects
41
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
1678
September, 2022
384
May, 2021
378
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
152
May, 2020
128
August, 2021
March, 2020
106
January, 2022
101
October, 2022
83
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
15
May, 2022
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5878
bed bed3+
bed bed9
819
tsv
546
bigWig
108
txt
40
bigBed bed9
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6870
Homo sapiens
Biosample type
2273
primary cell
2159
cell line
2062
tissue
420
in vitro differentiated cells
2
stem cell
Organ
893
epithelium
572
kidney
408
connective tissue
362
brain
295
musculature of body
255
pancreas
240
lung
232
intestine
222
vasculature
194
heart
193
bodily fluid
187
embryo
185
limb
184
blood
170
skin of body
165
blood vessel
140
large intestine
132
liver
113
extraembryonic component
100
eye
95
stomach
79
uterus
74
bone element
73
adipose tissue
73
mammary gland
65
prostate gland
64
small intestine
61
artery
58
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
41
gonad
37
esophagus
37
thymus
32
spinal cord
27
spleen
22
testis
19
lymphatic vessel
19
lymphoid tissue
19
thyroid gland
18
nerve
18
ovary
18
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
bone marrow
11
breast
8
tongue
8
vagina
7
urinary bladder
5
trachea
3
nose
1
pericardium
Project
6211
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
5944
hg19
935
GRCh38
4
hg18
month_released!
March, 2020
files.file_type!
bed bed9+
bed bed9
BIOSAMPLE
TYPE
6918 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
Fine-mapped variants
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
9
1
2
2
B cell
14
10
6
2
+ See 445 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
K562
7
23
1
1
2
1
EndoC_BH1
1
8
1
8
3
1
+ See 762 more…
tissue
heart
37
19
1
5
1
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
10
1
7
1
1
brain
29
16
3
2
1
1
2
1
lung
33
16
1
1
+ See 259 more…
in vitro differentiated cells
neural progenitor cell
5
4
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
+ See 120 more…
stem cell
H1-hESC
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download