Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
965
histone modifications
880
accessible chromatin
811
binding sites
805
candidate regulatory elements
651
gene expression
472
target gene predictions
167
differential activity
165
eQTL
130
variant allelic effects
96
chromatin state
11
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
1
representative DNase hypersensitivity sites
Date released
2542
February, 2021
September, 2022
385
May, 2021
373
February, 2024
323
November, 2021
286
September, 2023
283
June, 2020
144
May, 2020
120
August, 2021
March, 2020
103
January, 2022
101
October, 2022
77
January, 2020
70
March, 2023
56
January, 2021
53
February, 2020
49
May, 2022
44
November, 2022
35
August, 2017
30
March, 2024
29
February, 2023
19
April, 2020
12
October, 2019
11
November, 2019
9
August, 2018
8
May, 2019
3
November, 2020
3
September, 2018
2
April, 2019
2
January, 2018
2
May, 2024
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4104
bed bed3+
801
tsv
520
bigWig
108
txt
34
bed bed9+
30
bigBed bed9
26
bed bed9
24
csv
15
bigBed narrowPeak
1
bam
Organism
5131
Homo sapiens
Biosample type
1957
primary cell
1794
cell line
1071
tissue
353
in vitro differentiated cells
2
stem cell
Organ
792
epithelium
424
kidney
331
connective tissue
248
brain
224
pancreas
179
vasculature
162
musculature of body
143
bodily fluid
138
blood
133
embryo
132
blood vessel
heart
123
intestine
102
skin of body
100
liver
100
lung
97
limb
82
eye
75
large intestine
71
uterus
57
adipose tissue
49
stomach
48
artery
47
bone element
47
extraembryonic component
45
mammary gland
39
prostate gland
38
lymph node
34
penis
30
adrenal gland
26
small intestine
25
gonad
25
placenta
25
ureter
23
esophagus
16
spinal cord
16
vein
15
lymphatic vessel
15
spleen
15
thymus
14
testis
13
nerve
13
pituitary gland
11
thyroid gland
10
bone marrow
10
bronchus
10
ovary
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
vagina
3
urinary bladder
nose
1
pericardium
Project
4480
AMP
323
ENCODE
281
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
4229
hg19
912
GRCh38
4
hg18
month_released!
March, 2020
September, 2022
organ_slims!
heart
nose
BIOSAMPLE
TYPE
5179 results
search-icon
table-tab-icon
Clear Filters
histone modifications
accessible chromatin
binding sites
candidate regulatory elements
gene expression
target gene predictions
differential activity
eQTL
variant allelic effects
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
Fine-mapped variants
representative DNase hypersensitivity sites
primary cell
monocyte
86
18
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
30
4
7
3
5
1
endothelial cell
1
15
2
9
7
1
2
2
fibroblast
16
1
4
2
6
macrophage
12
2
3
7
3
1
+ See 432 more…
cell line
HeLa-S3
1
2
52
H1-hESC
1
1
2
8
38
K562
1
1
2
1
17
1
EndoC_BH1
1
8
1
8
3
1
breast cancer cell
11
9
+ See 741 more…
tissue
islet of Langerhans
1
5
1
9
1
13
1
3
2
2
2
kidney
2
10
1
15
7
1
1
2
retina
1
23
1
3
1
1
1
stomach
1
3
21
1
2
1
liver
2
4
1
6
1
1
1
7
2
1
+ See 241 more…
in vitro differentiated cells
neural progenitor cell
15
10
1
7
adipocyte
1
4
1
2
1
4
4
embryonic stem cell
1
6
1
5
hematopoietic multipotent progenitor cell
1
1
1
9
1
cardiomyocytes
11
+ See 116 more…
stem cell
H1-hESC
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download