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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
971
histone modifications
853
accessible chromatin
839
candidate regulatory elements
817
binding sites
645
gene expression
505
target gene predictions
167
differential activity
143
eQTL
108
chromatin state
74
Fine-mapped variants
61
variant allelic effects
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
other
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
September, 2022
389
May, 2021
378
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
February, 2020
56
January, 2021
49
May, 2022
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4110
bed bed3+
851
tsv
489
bigWig
108
txt
37
bigBed bed9
34
bed bed9+
33
bed bed9
24
csv
15
bigBed narrowPeak
1
bam
Organism
5218
Homo sapiens
Biosample type
1880
primary cell
1808
cell line
1167
tissue
358
in vitro differentiated cells
4
stem cell
Organ
774
epithelium
399
kidney
319
connective tissue
249
brain
225
pancreas
171
vasculature
160
musculature of body
143
bodily fluid
138
blood
134
embryo
128
blood vessel
125
heart
125
intestine
105
liver
102
skin of body
101
lung
90
limb
78
eye
76
large intestine
71
uterus
57
adipose tissue
50
stomach
47
extraembryonic component
46
bone element
45
artery
45
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
27
small intestine
26
gonad
25
placenta
24
esophagus
22
ureter
18
spinal cord
16
spleen
15
lymphatic vessel
15
thymus
15
vein
14
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bronchus
10
nerve
9
bone marrow
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
Project
4512
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
4290
hg19
996
GRCh38
4
hg18
month_released!
May, 2020
September, 2022
February, 2020
BIOSAMPLE
TYPE
5219 results
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table-tab-icon
Clear Filters
histone modifications
accessible chromatin
candidate regulatory elements
binding sites
gene expression
target gene predictions
differential activity
eQTL
chromatin state
Fine-mapped variants
variant allelic effects
caQTL
hQTL
sQTL
variant to gene
meQTL
pQTL
other
representative DNase hypersensitivity sites
primary cell
monocyte
86
16
1
15
1
4
2
1
1
CD8-positive, alpha-beta T cell
30
2
7
3
4
1
endothelial cell
1
15
2
9
7
1
2
2
fibroblast
16
1
4
2
6
hepatocyte
4
8
1
13
2
1
+ See 431 more…
cell line
HeLa-S3
2
1
52
H1-hESC
1
1
2
8
38
K562
1
1
1
2
17
1
EndoC_BH1
1
8
1
8
1
3
breast cancer cell
11
9
+ See 746 more…
tissue
islet of Langerhans
1
3
2
11
1
13
3
2
2
2
kidney
2
10
15
1
7
1
2
heart
1
5
18
1
2
1
1
stomach
1
3
21
1
2
1
retina
1
23
3
1
+ See 249 more…
in vitro differentiated cells
neural progenitor cell
15
10
1
7
1
adipocyte
1
4
2
1
1
4
4
embryonic stem cell
1
6
1
1
5
hematopoietic multipotent progenitor cell
1
1
9
1
1
cardiomyocytes
11
+ See 117 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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