Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
99
candidate regulatory elements
88
target gene predictions
76
accessible chromatin
52
chromatin state
50
gene expression
33
differential activity
23
binding sites
19
histone modifications
18
eQTL
8
variant allelic effects
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
146
September, 2022
99
February, 2021
47
March, 2023
38
May, 2021
28
November, 2021
26
February, 2024
20
January, 2021
12
June, 2020
9
March, 2020
8
August, 2021
7
August, 2018
7
January, 2022
May, 2020
6
October, 2019
4
August, 2017
4
January, 2020
4
October, 2022
2
February, 2020
2
March, 2024
2
November, 2019
1
April, 2019
1
February, 2023
1
January, 2018
1
June, 2021
Available data
318
bed bed3+
78
tsv
60
bigWig
47
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
475
Homo sapiens
Biosample type
226
primary cell
134
tissue
103
cell line
12
in vitro differentiated cells
Organ
934
epithelium
633
kidney
448
connective tissue
447
brain
370
musculature of body
311
lung
289
intestine
271
pancreas
251
vasculature
244
heart
234
limb
218
bodily fluid
215
embryo
207
blood
204
skin of body
193
blood vessel
174
large intestine
153
liver
146
extraembryonic component
119
stomach
107
eye
88
bone element
87
mammary gland
86
adipose tissue
84
small intestine
83
uterus
78
prostate gland
73
adrenal gland
73
placenta
70
artery
64
penis
62
lymph node
61
ureter
50
gonad
48
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
24
lymphoid tissue
23
ovary
23
thyroid gland
22
nerve
21
lymphatic vessel
21
vein
19
mouth
18
skeleton
16
bronchus
13
breast
13
pituitary gland
12
bone marrow
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
425
AMP
28
ENCODE
20
T1D
2
community
Genome assembly (visualization)
379
hg19
106
GRCh38
month_released!
May, 2020
BIOSAMPLE
TYPE
475 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
gene expression
differential activity
binding sites
histone modifications
eQTL
variant allelic effects
Fine-mapped variants
sQTL
variant to gene
primary cell
foreskin keratinocyte
11
4
4
pancreatic ductal cell
3
6
3
3
1
2
1
pancreatic beta cell
3
8
3
3
1
keratinocyte
3
5
2
3
1
2
1
pancreatic alpha cell
3
7
3
3
1
+ See 25 more…
tissue
islet of Langerhans
1
4
3
11
2
1
13
2
2
2
body of pancreas
8
5
4
2
1
3
pancreas
5
5
5
3
1
1
1
endocrine pancreas
7
4
4
lower leg skin
6
2
2
+ See 13 more…
cell line
EndoC_BH1
1
8
8
3
GM23248
2
1
1
1
1
1
Panc1
2
2
1
RPMI7951
2
1
1
1
SK-MEL-5
2
1
1
1
+ See 21 more…
in vitro differentiated cells
foreskin keratinocyte
1
1
1
iPS DF 4.7 Cell Line
1
1
1
pancreatic ductal cell
3
dermis microvascular lymphatic vessel endothelial cell
1
1
skin fibroblast
1
See all biosamples
Download