Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1671
candidate regulatory elements
1357
target gene predictions
977
histone modifications
911
accessible chromatin
817
binding sites
144
eQTL
140
variant allelic effects
75
chromatin state
43
gene expression
13
caQTL
9
differential activity
5
hQTL
5
sQTL
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
2
variant to gene
Date released
2412
February, 2021
1678
September, 2022
333
November, 2021
311
February, 2024
296
May, 2021
289
June, 2020
152
May, 2020
106
January, 2022
101
October, 2022
79
August, 2021
66
January, 2020
56
January, 2021
49
March, 2020
49
May, 2022
44
November, 2022
35
August, 2017
31
February, 2023
19
April, 2020
17
February, 2020
13
March, 2023
13
November, 2019
9
August, 2018
9
October, 2019
5
September, 2023
3
September, 2018
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5921
bed bed3+
tsv
bed bed9
544
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6133
Homo sapiens
Biosample type
2151
cell line
1954
tissue
1714
primary cell
355
in vitro differentiated cells
4
stem cell
Organ
575
epithelium
352
connective tissue
333
brain
324
kidney
290
musculature of body
240
lung
231
intestine
192
bodily fluid
188
pancreas
183
blood
180
heart
178
embryo
177
limb
170
vasculature
168
skin of body
139
large intestine
130
blood vessel
114
liver
113
extraembryonic component
98
eye
94
stomach
77
uterus
73
mammary gland
71
bone element
65
small intestine
64
prostate gland
59
adipose tissue
58
adrenal gland
57
placenta
54
lymph node
54
penis
51
artery
51
ureter
40
gonad
38
thymus
36
esophagus
30
spinal cord
27
spleen
21
testis
18
lymphoid tissue
18
ovary
18
thyroid gland
18
vein
15
nerve
15
skeleton
14
bronchus
14
lymphatic vessel
14
mouth
12
bone marrow
12
pituitary gland
10
breast
7
tongue
7
urinary bladder
7
vagina
5
trachea
3
nose
1
pericardium
Project
5754
AMP
333
ENCODE
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
5997
hg19
899
GRCh38
4
hg18
month_released!
November, 2020
files.file_type!
bed bed9
tsv
BIOSAMPLE
TYPE
6180 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
eQTL
variant allelic effects
chromatin state
gene expression
caQTL
differential activity
hQTL
sQTL
meQTL
other
pQTL
Fine-mapped variants
variant to gene
cell line
HeLa-S3
5
55
1
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
+ See 761 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
1
kidney
29
14
2
10
1
1
1
brain
29
16
3
2
1
2
1
lung
33
17
1
+ See 230 more…
primary cell
monocyte
2
86
18
1
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
1
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
1
2
1
2
B cell
14
10
6
+ See 344 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
embryonic stem cell
1
1
6
1
mesenchymal stem cell
3
3
1
1
1
+ See 106 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download