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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
481
accessible chromatin
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
77
binding sites
75
variant allelic effects
6
chromatin state
5
eQTL
4
caQTL
3
hQTL
2
meQTL
1
other
Date released
334
February, 2021
333
November, 2021
327
September, 2022
179
May, 2021
103
February, 2024
81
May, 2020
56
January, 2021
52
June, 2020
October, 2022
21
January, 2020
19
April, 2020
16
August, 2021
13
May, 2022
9
November, 2022
6
August, 2017
5
October, 2019
4
February, 2023
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1564
bed bed3+
589
tsv
410
bigWig
164
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1519
Homo sapiens
Biosample type
2055
cell line
1850
tissue
1564
primary cell
347
in vitro differentiated cells
4
stem cell
Organ
439
epithelium
196
connective tissue
100
vasculature
80
skin of body
70
pancreas
69
blood vessel
51
kidney
38
liver
38
musculature of body
37
mammary gland
33
penis
31
extraembryonic component
29
brain
28
lung
24
heart
23
intestine
19
artery
19
eye
18
embryo
14
bronchus
14
vein
12
bone element
11
adrenal gland
11
bone marrow
11
stomach
10
lymphatic vessel
9
blood
9
bodily fluid
9
esophagus
8
placenta
8
prostate gland
6
large intestine
5
trachea
5
uterus
4
small intestine
3
gonad
3
mouth
3
spinal cord
3
thyroid gland
2
ovary
1
limb
1
thymus
Project
1155
AMP
333
ENCODE
57
T1D
19
LungMap
Genome assembly (visualization)
1560
hg19
497
GRCh38
month_released!
October, 2022
BIOSAMPLE
TYPE
1564 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
binding sites
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
meQTL
other
primary cell
monocyte
18
2
86
1
1
1
CD8-positive, alpha-beta T cell
4
5
7
30
common myeloid progenitor, CD34-positive
14
27
B cell
6
10
14
endothelial cell
15
7
1
2
2
1
1
CD14-positive monocyte
19
8
fibroblast
16
4
6
CD4-positive, alpha-beta memory T cell
9
14
pericyte cell
10
10
1
hepatocyte
8
3
1
4
1
2
macrophage
12
3
3
1
smooth muscle cell
9
6
2
1
T cell
6
4
4
2
regulatory T cell
5
4
5
1
1
CD8-positive, alpha-beta memory T cell
7
8
astrocyte
8
4
2
1
foreskin keratinocyte
4
11
keratinocyte
2
5
3
2
1
1
1
natural killer cell
3
5
6
1
endothelial cell of umbilical vein
2
4
6
1
1
mononuclear cell
6
7
1
trophoblast cell
1
5
7
1
foreskin fibroblast
1
2
6
2
2
osteoblast
5
2
2
2
2
CD4-positive, alpha-beta T cell
1
3
8
T-helper 1 cell
3
3
6
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
mammary epithelial cell
1
1
3
3
3
1
pancreatic beta cell
8
3
1
pancreatic ductal cell
5
3
2
1
1
fibroblast of lung
4
6
1
pancreatic alpha cell
7
3
1
skeletal muscle myoblast
2
2
4
1
1
1
T-helper 17 cell
2
3
5
T-helper 2 cell
2
3
5
bronchial epithelial cell
1
2
4
1
2
mammary gland epithelial cell
1
4
3
1
1
neurosphere
3
7
pancreatic delta cell
5
4
1
fibroblast of cardiac tissue
2
4
3
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
1
1
neutrophil
3
4
1
1
pancreatic acinar cell
5
3
1
skeletal muscle satellite cell
5
2
2
dermis blood vessel endothelial cell
2
6
fibroblast of dermis
4
4
glutamatergic neuron
6
2
retinal pigment epithelial cell
3
1
2
1
1
epithelial cell of prostate
3
4
erythroblast
5
2
kidney tubule cell
2
2
3
skeletal muscle fiber
5
2
skin fibroblast
2
3
2
type II pneumocyte
4
2
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
T-cell
2
4
cardiac muscle cell
1
1
2
2
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
fibroblast of breast
2
4
fibroblast of mammary gland
1
1
2
1
1
fibroblast of pulmonary artery
1
1
2
1
1
fibroblast of villous mesenchyme
1
1
2
1
1
hepatic stellate cell
3
1
1
1
luminal epithelial cell of mammary gland
2
3
1
memory B cell
4
2
myoepithelial cell of mammary gland
2
4
naive T cell
3
3
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
1
1
2
1
1
renal cortical epithelial cell
2
1
2
1
cardiac fibroblast
3
2
astrocyte of the cerebellum
1
1
2
1
astrocyte of the hippocampus
1
1
2
1
basal cell
2
1
2
choroid plexus epithelial cell
1
1
2
1
epithelial cell of esophagus
1
2
2
epithelial cell of proximal tubule
1
1
2
1
foreskin melanocyte
1
4
gabaergic neuron
3
2
glomerular endothelial cell
1
1
2
1
glomerular visceral epithelial cell
2
1
2
inhibitory neuron
5
kidney epithelial cell
1
1
2
1
kidney glomerular epithelial cell
2
1
2
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
plasma cell
2
1
1
1
skeletal muscle cell
1
1
2
1
smooth muscle cell of the brain vasculature
1
1
2
1
tracheal epithelial cell
1
2
2
type I muscle cell
3
1
1
type II muscle cell
3
1
1
acute myeloid leukemia cell
2
2
aortic endothelial cell
2
1
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
1
1
2
dermis lymphatic vessel endothelial cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
2
fibroblast of the aortic adventitia
1
2
1
iris pigment epithelial cell
1
1
2
lung microvascular endothelial cell
1
3
megakaryocyte
2
2
mesenchymal stem cell
2
1
1
mesothelial cell
2
1
1
non-pigmented ciliary epithelial cell
1
1
2
pancreatic polypeptide-secreting cell
2
1
1
preadipocyte
1
2
1
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
CD4-positive helper T cell
1
2
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
adipocyte
2
1
aortic adventitial fibroblast
1
1
1
astrocyte of the spinal cord
1
2
bone marrow cell
2
1
brain pericyte
1
1
1
cardiac fibroblast
3
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
erythroid cell
1
1
1
fibroblast of gingiva
1
2
fibroblast of the conjunctiva
1
2
goblet cell
1
2
kidney capillary endothelial cell
1
1
1
mononuclear cell of bone marrow
1
2
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic stellate cell
2
1
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
renal epithelial cell
1
1
1
schwann cell
2
1
stromal cell of bone marrow
1
2
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
leukocyte
2
luteal cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
mature neutrophil
1
1
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
1
1
microglial cell
1
1
myoepithelial cell
1
1
myotube
1
1
naive regulatory T cell
2
naive t cell
1
1
natural killer cell mediated cytotoxicity
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
inflammatory macrophage
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
neural cell
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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