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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
471
accessible chromatin
453
gene expression
372
target gene predictions
328
candidate regulatory elements
207
histone modifications
197
chromatin state
152
differential activity
80
variant allelic effects
77
binding sites
43
eQTL
5
hQTL
4
caQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
456
February, 2021
333
November, 2021
281
September, 2023
256
May, 2021
152
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
August, 2021
40
May, 2022
37
January, 2022
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1548
bed bed3+
564
tsv
397
bigWig
164
bed bed9
83
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2351
Homo sapiens
Biosample type
2606
tissue
2396
primary cell
2273
cell line
439
in vitro differentiated cells
4
stem cell
Organ
790
epithelium
288
kidney
268
connective tissue
165
vasculature
126
pancreas
112
blood vessel
97
skin of body
60
liver
47
musculature of body
44
mammary gland
39
extraembryonic component
39
penis
33
brain
32
lung
31
heart
28
artery
23
intestine
22
embryo
22
eye
19
vein
17
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
prostate gland
9
blood
9
bodily fluid
9
placenta
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1706
AMP
333
ENCODE
281
KPMP
57
T1D
19
LungMap
Genome assembly (visualization)
1757
hg19
702
GRCh38
month_released!
October, 2022
August, 2021
BIOSAMPLE
TYPE
2396 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
variant allelic effects
binding sites
eQTL
hQTL
caQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
2
5
7
30
1
B cell
6
2
10
14
8
endothelial cell
14
6
7
1
2
2
1
1
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
hepatocyte
8
13
3
1
1
1
2
1
fibroblast
16
4
6
2
regulatory T cell
5
7
4
5
1
3
1
2
macrophage
12
1
3
3
7
1
T-helper 1 cell
3
7
3
6
3
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
epithelial cell of proximal tubule
1
15
1
2
1
1
T-helper 17 cell
2
6
3
5
3
1
glomerular endothelial cell
2
13
1
2
1
1
mononuclear cell
6
7
6
1
natural killer cell
3
1
5
6
1
3
1
endothelial cell of umbilical vein
2
4
6
5
1
1
foreskin keratinocyte
4
11
4
pancreatic ductal cell
6
3
3
2
3
1
1
smooth muscle cell
9
1
6
2
1
pancreatic beta cell
8
3
3
3
1
trophoblast cell
1
5
7
1
4
T-helper 2 cell
2
3
3
5
3
1
astrocyte
8
1
4
2
1
1
keratinocyte
2
5
3
2
3
1
1
pancreatic alpha cell
7
3
3
3
1
endothelial cell of hepatic sinusoid
6
4
6
osteoblast
5
2
2
2
2
1
2
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
3
4
3
1
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
skeletal muscle myoblast
2
1
2
4
1
3
1
1
fibroblast of lung
4
6
4
foreskin fibroblast
1
2
6
2
1
2
naive thymus-derived CD4-positive, alpha-beta T cell
1
1
2
4
2
1
1
1
1
mammary gland epithelial cell
1
4
3
3
1
1
neurosphere
3
7
3
skeletal muscle satellite cell
5
2
2
2
2
bronchial epithelial cell
1
2
4
1
2
2
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
mammary epithelial cell
1
1
3
3
1
3
fibroblast of dermis
4
4
3
dermis blood vessel endothelial cell
2
6
2
glomerular visceral epithelial cell
1
5
1
2
1
kidney tubule cell
2
1
2
3
2
epithelial cell of prostate
3
4
2
erythroblast
5
2
2
hepatic stellate cell
3
1
1
1
1
1
1
mature neutrophil
1
7
1
memory B cell
4
3
2
naive T cell
3
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
3
2
1
retinal pigment epithelial cell
3
1
2
1
1
1
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
glutamatergic neuron
6
2
kidney glomerular epithelial cell
2
1
1
2
1
1
myoepithelial cell of mammary gland
2
4
2
pancreatic stellate cell
2
2
1
3
renal cortical epithelial cell
2
1
1
2
1
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
fibroblast of mammary gland
1
1
2
1
1
1
fibroblast of pulmonary artery
1
1
2
1
1
1
fibroblast of villous mesenchyme
1
1
2
1
1
1
kidney epithelial cell
1
1
1
2
1
1
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
3
1
1
mesangial cell
2
5
pulmonary artery endothelial cell
1
1
2
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
cardiac muscle cell
1
1
2
2
choroid plexus epithelial cell
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
foreskin melanocyte
1
4
1
gamma-delta T cell
2
4
kidney interstitial cell
6
mast cell
1
1
1
1
1
1
mesenchymal stem cell
2
1
1
1
1
naive B cell
3
1
2
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
2
1
1
peripheral blood mononuclear cell
4
1
1
plasma cell
2
1
1
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
type I muscle cell
3
1
1
1
type II muscle cell
3
1
1
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
alternatively activated macrophage
1
4
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
1
3
1
myofibroblast cell
1
3
1
non-pigmented ciliary epithelial cell
1
1
2
1
pancreatic endothelial cell
1
1
3
tracheal epithelial cell
1
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
adult endothelial progenitor cell
3
1
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
inflammatory macrophage
1
3
leukocyte
2
2
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
1
2
1
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
CD4-positive helper T cell
1
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
aortic adventitial fibroblast
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
cardiac fibroblast
3
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
glial cell
2
1
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary stem cell
1
1
1
meso-epithelial cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
naive B cel
2
1
naive regulatory T cell
2
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
renal epithelial cell
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
alveolar macrophage
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
melanocyte
1
1
myeloid dendritic cell
1
1
myoepithelial cell
1
1
myotube
1
1
naive t cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal proximal tubule cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1a B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal tubule
1
quiescent pancreatic stellate cell
1
renal connecting tubule
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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