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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
867
accessible chromatin
857
histone modifications
839
candidate regulatory elements
817
binding sites
593
gene expression
384
target gene predictions
167
differential activity
166
eQTL
140
variant allelic effects
74
Fine-mapped variants
72
chromatin state
12
caQTL
4
variant to gene
3
pQTL
2
other
2
sQTL
1
representative DNase hypersensitivity sites
Date released
2590
February, 2021
September, 2022
May, 2021
378
February, 2024
333
November, 2021
289
June, 2020
286
September, 2023
155
May, 2020
128
August, 2021
128
March, 2020
106
January, 2022
101
October, 2022
89
January, 2020
70
March, 2023
64
February, 2020
56
January, 2021
May, 2022
44
November, 2022
35
August, 2017
32
February, 2023
30
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
9
May, 2019
8
April, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
3945
bed bed3+
810
tsv
522
bigWig
108
txt
35
bigBed bed9
31
bed bed9
24
csv
15
bigBed narrowPeak
1
bam
Organism
4952
Homo sapiens
Biosample type
1740
cell line
1686
primary cell
1242
tissue
326
in vitro differentiated cells
4
stem cell
Organ
762
epithelium
427
kidney
319
connective tissue
275
brain
200
pancreas
188
vasculature
162
musculature of body
143
heart
141
blood vessel
139
bodily fluid
134
blood
127
embryo
119
intestine
105
liver
103
limb
97
lung
97
skin of body
82
eye
71
large intestine
69
uterus
62
adipose tissue
52
artery
48
stomach
46
bone element
44
extraembryonic component
43
mammary gland
37
lymph node
37
prostate gland
33
penis
29
adrenal gland
26
small intestine
25
gonad
25
ureter
24
esophagus
24
placenta
18
spinal cord
16
nerve
16
vein
15
lymphatic vessel
15
spleen
15
thymus
14
testis
10
bronchus
10
ovary
10
thyroid gland
9
bone marrow
9
lymphoid tissue
9
skeleton
7
mouth
6
breast
5
trachea
4
tongue
4
urinary bladder
4
vagina
3
pituitary gland
1
nose
1
pericardium
Project
4293
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
4106
hg19
929
GRCh38
4
hg18
month_released!
September, 2022
May, 2022
May, 2021
BIOSAMPLE
TYPE
5000 results
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table-tab-icon
Clear Filters
accessible chromatin
histone modifications
candidate regulatory elements
binding sites
gene expression
target gene predictions
differential activity
eQTL
variant allelic effects
Fine-mapped variants
chromatin state
caQTL
variant to gene
pQTL
other
sQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
2
1
51
H1-hESC
1
1
2
8
37
K562
1
1
1
2
16
1
breast cancer cell
11
9
HFFc6
19
+ See 744 more…
primary cell
endothelial cell
13
1
2
8
7
1
2
2
hepatocyte
8
4
1
13
1
2
fibroblast
14
1
4
2
6
macrophage
11
1
3
7
3
1
epithelial cell of proximal tubule
1
1
1
16
1
+ See 428 more…
tissue
islet of Langerhans
4
1
2
9
1
13
1
2
3
2
2
kidney
10
2
15
1
7
1
1
2
heart
5
1
18
1
3
1
2
2
retina
23
1
3
1
1
1
1
stomach
3
1
21
1
1
+ See 254 more…
in vitro differentiated cells
neural progenitor cell
10
15
1
7
1
adipocyte
4
1
2
1
1
4
hematopoietic multipotent progenitor cell
1
1
9
1
cardiomyocytes
11
extended pluripotent stem (EPS) cells
9
+ See 108 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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