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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
963
histone modifications
854
accessible chromatin
806
binding sites
750
candidate regulatory elements
479
gene expression
469
target gene predictions
164
eQTL
124
variant allelic effects
111
differential activity
109
chromatin state
74
Fine-mapped variants
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2392
February, 2021
September, 2022
387
May, 2021
328
November, 2021
326
February, 2024
272
June, 2020
146
September, 2023
136
May, 2020
125
March, 2020
104
January, 2022
100
August, 2021
98
October, 2022
75
January, 2020
70
March, 2023
56
January, 2021
55
February, 2020
49
May, 2022
44
November, 2022
35
August, 2017
32
February, 2023
26
March, 2024
19
April, 2020
14
November, 2019
14
October, 2019
9
August, 2018
8
May, 2019
7
April, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
4018
bed bed3+
645
tsv
505
bigWig
38
bigBed bed9
34
bed bed9
34
bed bed9+
24
csv
21
txt
15
bigBed narrowPeak
1
bam
Organism
4892
Homo sapiens
Biosample type
1734
cell line
1695
primary cell
1141
tissue
364
in vitro differentiated cells
4
stem cell
Organ
798
epithelium
kidney
338
connective tissue
286
brain
233
pancreas
191
vasculature
171
musculature of body
147
heart
144
blood vessel
143
bodily fluid
138
blood
134
embryo
125
intestine
110
liver
106
limb
102
skin of body
101
lung
82
eye
76
large intestine
uterus
65
adipose tissue
54
artery
50
stomach
47
bone element
47
extraembryonic component
45
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
27
small intestine
26
gonad
25
placenta
25
ureter
24
esophagus
19
spinal cord
17
vein
16
nerve
16
spleen
16
thymus
15
lymphatic vessel
14
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bone marrow
10
bronchus
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Project
4378
AMP
328
ENCODE
141
KPMP
60
T1D
19
LungMap
9
community
5
ITG
Genome assembly (visualization)
4223
hg19
948
GRCh38
4
hg18
month_released!
September, 2022
organ_slims!
kidney
uterus
BIOSAMPLE
TYPE
4940 results
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Clear Filters
histone modifications
accessible chromatin
binding sites
candidate regulatory elements
gene expression
target gene predictions
eQTL
variant allelic effects
differential activity
chromatin state
Fine-mapped variants
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
H1-hESC
1
1
2
8
38
EndoC_BH1
1
8
1
8
1
1
3
K562
1
1
2
1
17
1
breast cancer cell
11
9
HFFc6
19
+ See 733 more…
primary cell
monocyte
86
18
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
30
4
7
3
5
1
endothelial cell
1
15
2
9
7
1
2
2
hepatocyte
4
8
1
13
2
2
fibroblast
16
1
4
2
6
+ See 370 more…
tissue
islet of Langerhans
1
5
2
11
1
13
1
3
2
2
2
heart
1
5
1
18
3
1
2
2
retina
1
23
1
3
1
1
1
stomach
1
3
21
1
2
1
liver
2
4
1
6
1
3
7
1
2
1
+ See 233 more…
in vitro differentiated cells
neural progenitor cell
15
10
1
7
1
adipocyte
1
4
1
2
1
4
4
embryonic stem cell
1
6
1
1
5
hematopoietic multipotent progenitor cell
1
1
1
9
1
cardiomyocytes
11
+ See 118 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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