Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
36
candidate regulatory elements
11
target gene predictions
10
accessible chromatin
6
binding sites
5
histone modifications
chromatin state
2
eQTL
2
gene expression
Date released
September, 2022
45
February, 2021
7
June, 2020
6
November, 2021
5
May, 2021
3
February, 2024
2
January, 2022
2
March, 2024
1
March, 2020
1
October, 2022
Available data
68
bed bed3+
3
bigWig
2
tsv
Organism
72
Homo sapiens
Biosample type
44
tissue
22
cell line
6
primary cell
Organ
793
epithelium
425
kidney
332
connective tissue
274
brain
229
pancreas
182
vasculature
musculature of body
141
bodily fluid
136
blood
135
blood vessel
133
embryo
132
heart
121
intestine
107
liver
102
limb
101
skin of body
100
lung
82
eye
73
large intestine
71
uterus
63
adipose tissue
52
artery
49
stomach
47
extraembryonic component
46
bone element
44
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
26
gonad
26
small intestine
25
placenta
25
ureter
24
esophagus
19
spinal cord
16
spleen
16
thymus
15
lymphatic vessel
15
nerve
14
testis
14
vein
13
pituitary gland
11
ovary
11
thyroid gland
10
bronchus
9
bone marrow
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Project
66
AMP
6
ENCODE
Genome assembly (visualization)
68
hg19
10
GRCh38
month_released!
September, 2022
organ_slims!
musculature of body
annotation_type!
chromatin state
BIOSAMPLE
TYPE
72 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
binding sites
histone modifications
eQTL
gene expression
tissue
large intestine
15
1
1
1
sigmoid colon
5
2
1
transverse colon
4
1
1
1
colonic mucosa
2
1
mucosa of rectum
2
+ See 5 more…
cell line
HT-29
1
1
1
1
1
HCT-116 cell
1
1
2
RKO
1
1
1
1
SW480
1
1
1
1
HCT116
1
2
+ See 2 more…
primary cell
colon epithelial cell
3
3
See all biosamples
Download