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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
223
accessible chromatin
167
candidate regulatory elements
122
gene expression
113
target gene predictions
92
histone modifications
71
binding sites
1
variant allelic effects
Date released
487
September, 2022
456
February, 2021
333
November, 2021
281
September, 2023
256
May, 2021
152
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
53
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
2
May, 2024
1
July, 2020
1
June, 2021
1
March, 2024
0
August, 2020
Available data
667
bed bed3+
226
bigWig
122
tsv
83
txt
3
bigBed narrowPeak
Organism
789
Homo sapiens
Biosample type
1304
cell line
789
primary cell
642
tissue
189
in vitro differentiated cells
Organ
291
epithelium
106
connective tissue
96
kidney
38
skin of body
34
vasculature
25
pancreas
23
blood vessel
20
intestine
20
musculature of body
19
penis
18
mammary gland
16
heart
14
lung
12
liver
11
extraembryonic component
10
adrenal gland
9
eye
9
stomach
8
artery
8
blood
8
bodily fluid
7
bone element
7
bronchus
7
embryo
6
bone marrow
6
large intestine
5
brain
5
esophagus
5
lymphatic vessel
5
placenta
5
vein
4
small intestine
4
trachea
4
uterus
2
gonad
2
ovary
2
prostate gland
2
thyroid gland
1
mouth
1
spinal cord
1
thymus
Project
456
AMP
333
ENCODE
Genome assembly (visualization)
667
hg19
334
GRCh38
BIOSAMPLE
TYPE
789 results
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table-tab-icon
Clear Filters
accessible chromatin
candidate regulatory elements
gene expression
target gene predictions
histone modifications
binding sites
variant allelic effects
primary cell
endothelial cell
10
4
6
1
2
fibroblast
14
4
pericyte cell
9
9
epithelial cell of proximal tubule
1
14
common myeloid progenitor, CD34-positive
14
glomerular endothelial cell
1
12
excitatory neuron
12
smooth muscle cell
6
6
astrocyte
7
1
2
1
CD4-positive, alpha-beta T cell
1
8
1
macrophage
9
1
CD8-positive, alpha-beta T cell
1
7
1
foreskin fibroblast
5
2
2
mammary epithelial cell
3
3
3
B cell
3
5
keratinocyte
2
1
2
2
1
foreskin keratinocyte
7
hepatocyte
1
3
1
1
1
kidney loop of Henle thin ascending limb epithelial cell
7
osteoblast
1
1
1
2
2
colon epithelial cell
3
3
kidney interstitial cell
6
mesangial cell
2
4
pancreatic ductal cell
2
1
2
1
peripheral blood mononuclear cell
4
1
1
CD4-positive, alpha-beta memory T cell
5
bronchial epithelial cell
2
1
2
cortical cell of adrenal gland
3
2
endothelial cell of umbilical vein
4
1
erythroblast
5
glomerular visceral epithelial cell
1
4
inhibitory neuron
5
kidney cortex collecting duct principal cell
5
kidney loop of Henle thick ascending limb epithelial cell
5
natural killer cell
3
1
1
plasma cell
1
1
1
1
1
skeletal muscle satellite cell
3
1
1
type II pneumocyte
3
2
CD14-positive monocyte
4
T cell
4
T-cell
4
blood vessel smooth muscle cell
2
2
dermis blood vessel endothelial cell
4
enteric smooth muscle cell
2
2
gabaergic neuron
2
2
glutamatergic neuron
2
2
luminal epithelial cell of mammary gland
2
2
mast cell
1
1
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
4
nephron progenitor
4
neurosphere
4
pancreatic acinar cell
3
1
pancreatic alpha cell
2
1
1
regulatory T cell
2
1
1
retinal pigment epithelial cell
1
1
1
1
skeletal muscle myoblast
2
1
1
smooth muscle cell of the esophagus
2
2
tracheal epithelial cell
2
2
trophoblast cell
3
1
CD1c-positive myeloid dendritic cell
1
1
1
S-shaped body
3
T-helper 1 cell
3
adult endothelial progenitor cell
3
cardiac fibroblast
3
endocardial cell
2
1
endothelial cell of lymphatic vessel
2
1
enteric neuron
2
1
enterocyte
3
fibroblast of cardiac tissue
2
1
fibroblast of lung
3
fibroblast of mammary gland
1
1
1
fibroblast of pulmonary artery
1
1
1
fibroblast of villous mesenchyme
1
1
1
foreskin melanocyte
3
hepatic stellate cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney connecting tubule epithelial cell
3
kidney cortex collecting duct intercalated cell
3
kidney distal convoluted tubule epithelial cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary gland epithelial cell
1
1
1
meso-epithelial cell
1
1
1
mesothelial cell
2
1
monocyte
2
1
mononuclear cell of bone marrow
1
2
oligodendrocyte precursor cell
2
1
pancreatic beta cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
preadipocyte
2
1
pulmonary artery endothelial cell
1
1
1
schwann cell
2
1
skeletal muscle fiber
3
type I pneumocyte
2
1
Adipose stromal cell
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Ishikawa
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
T-helper 17 cell
2
T-helper 2 cell
2
Th1 cell
1
1
Th17 cell
1
1
acute myeloid leukemia cell
2
alveolar macrophage
1
1
aortic adventitial fibroblast
1
1
basal cell
1
1
basal cell of epidermis
1
1
cardiac endothelial cell
1
1
cardiac muscle cell
2
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
ciliated cell
1
1
club cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epithelial cell of prostate
2
erythroid cell
1
1
erythroid progenitor cell
1
1
fetal cardiomyocyte
2
fibroblast of breast
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
lung microvascular endothelial cell
2
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature neutrophil
1
1
melanocyte
1
1
memory B cell
1
1
microglial cell
1
1
mononuclear cell
1
1
myoepithelial cell
1
1
myoepithelial cell of mammary gland
2
myotube
1
1
naive t cell
1
1
neoplastic cell
1
1
neuronal stem cell
1
1
neutrophil
2
non keratinizing barrier epithelial cell
1
1
oligodendrocyte
1
1
pancreatic A cell
2
pancreatic delta cell
1
1
paneth cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood stem cell
1
1
peripheral blood-derived erythroblast
2
prostate gland cancer cell
1
1
pulmonary interstitial fibroblast
1
1
regular atrial cardiac myocyte
1
1
renal epithelial cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
skin fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
thyroid follicular cell
1
1
type B pancreatic cell
2
type I cell of adrenal cortex
1
1
type I muscle cell
1
1
type II cell of adrenal cortex
1
1
type II muscle cell
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
B-cell lymphoma cell
1
B-lymphocyte
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD8-positive, alpha-beta memory T cell
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
Th2 cell
1
acute myeloid leukemia
1
adipocyte
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic endothelial cell
1
aortic smooth muscle cell
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
astrocyte of the spinal cord
1
bone cell
1
bone marrow cell
1
brain microvascular endothelial cell
1
brain pericyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
epithelial cell of esophagus
1
erythroid lineage cell
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of dermis
1
fibroblast of gingiva
1
fibroblast of peridontal ligament
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
fibroblast of the aortic adventitia
1
fibroblast of the conjunctiva
1
gastric goblet cell
1
glial cell
1
goblet cell
1
granulocyte
1
head and neck neoplasia
1
hepatoblast
1
induced T-regulatory cell
1
intestinal epithelial cell
1
iris pigment epithelial cell
1
islet of Langerhans
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
leukocyte
1
lung neuroendocrine cell
1
mature B cell
1
megakaryocyte
1
meningioma cell
1
mesenchymal stem cell
1
metanephros
1
mycosis fungoides
1
myeloid leukocyte
1
myofibroblast cell
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non-pigmented ciliary epithelial cell
1
pancreatic endocrine cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
primordial germ cell
1
proximal tubule
1
renal connecting tubule
1
renal cortical epithelial cell
1
retinal bipolar neuron
1
seminoma cell
1
skeletal muscle cell
1
smooth muscle cell of the brain vasculature
1
sperm
1
stromal cell of bone marrow
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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