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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
357
target gene predictions
308
candidate regulatory elements
280
gene expression
209
histone modifications
186
chromatin state
97
binding sites
96
differential activity
84
accessible chromatin
70
variant allelic effects
46
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
451
September, 2022
354
February, 2021
243
May, 2021
141
September, 2023
126
February, 2024
110
November, 2021
55
March, 2023
47
June, 2020
36
January, 2022
34
May, 2020
33
May, 2022
30
October, 2022
28
January, 2021
17
August, 2021
9
August, 2018
9
February, 2020
9
November, 2022
6
August, 2017
5
March, 2020
4
February, 2023
2
January, 2020
2
May, 2024
2
October, 2019
1
July, 2020
1
March, 2024
1
November, 2020
Available data
1529
bed bed3+
bigWig
353
tsv
153
bed bed9
27
bed bed9+
21
txt
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1755
Homo sapiens
Biosample type
2308
cell line
2248
tissue
1756
primary cell
457
in vitro differentiated cells
4
stem cell
Organ
668
epithelium
kidney
237
connective tissue
147
vasculature
100
blood vessel
95
skin of body
86
pancreas
43
liver
43
mammary gland
41
penis
38
musculature of body
37
extraembryonic component
27
artery
27
brain
25
heart
25
lung
20
embryo
19
vein
18
eye
bronchus
14
lymphatic vessel
12
bone element
12
intestine
11
bone marrow
10
prostate gland
9
blood
9
bodily fluid
8
esophagus
8
placenta
6
stomach
5
adrenal gland
5
trachea
4
mouth
4
spinal cord
4
uterus
3
gonad
3
large intestine
2
small intestine
2
thyroid gland
1
adipose tissue
1
limb
1
ovary
1
pericardium
1
testis
Project
1472
AMP
141
KPMP
110
ENCODE
31
T1D
2
community
Genome assembly (visualization)
1345
hg19
415
GRCh38
organ_slims!
bronchus
kidney
files.file_type!
bigWig
BIOSAMPLE
TYPE
1756 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
gene expression
histone modifications
chromatin state
binding sites
differential activity
accessible chromatin
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
2
15
86
1
2
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
5
7
3
30
1
B cell
10
14
2
8
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
endothelial cell
7
9
1
2
2
2
1
2
regulatory T cell
4
5
7
1
3
1
2
2
CD8-positive, alpha-beta memory T cell
7
8
7
T-helper 1 cell
3
6
7
3
1
1
hepatocyte
3
1
8
4
1
1
1
2
mononuclear cell
6
7
6
1
T-helper 17 cell
3
5
7
3
1
endothelial cell of umbilical vein
4
6
5
2
1
1
foreskin keratinocyte
4
11
4
natural killer cell
5
6
2
1
3
1
trophoblast cell
5
7
1
4
1
T cell
4
4
4
1
2
2
macrophage
3
2
1
3
7
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
2
6
2
1
4
1
T-helper 2 cell
3
5
3
3
1
fibroblast
4
1
2
6
2
keratinocyte
5
3
2
3
1
1
neutrophil
3
4
2
2
2
1
1
skeletal muscle myoblast
2
4
1
1
3
2
1
1
CD4-positive, alpha-beta T cell
3
8
3
osteoblast
2
2
2
2
1
3
2
pancreatic ductal cell
3
3
2
1
3
1
1
mammary epithelial cell
1
3
3
1
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
4
1
2
1
1
1
1
neurosphere
3
7
3
smooth muscle cell
6
1
2
2
1
1
fibroblast of dermis
4
4
3
1
mammary gland epithelial cell
4
3
3
1
1
pericyte cell
10
1
1
dermis blood vessel endothelial cell
2
6
2
endothelial cell of hepatic sinusoid
6
4
fibroblast of cardiac tissue
4
3
3
pancreatic acinar cell
3
3
3
1
pancreatic delta cell
3
3
3
1
astrocyte
4
2
1
1
1
epithelial cell of prostate
3
4
2
mature neutrophil
1
7
1
naive T cell
3
3
3
pancreatic alpha cell
2
3
3
1
pancreatic beta cell
2
3
3
1
skeletal muscle satellite cell
2
2
2
2
1
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
2
1
1
2
1
fibroblast of pulmonary artery
1
2
1
1
2
1
fibroblast of villous mesenchyme
1
2
1
1
2
1
myoepithelial cell of mammary gland
2
4
2
retinal pigment epithelial cell
1
2
1
1
2
1
skin fibroblast
3
2
2
1
CD1c-positive myeloid dendritic cell
1
2
1
1
1
1
hepatic stellate cell
1
1
1
1
1
1
1
pulmonary artery endothelial cell
1
2
1
1
1
1
T-cell
2
4
alternatively activated macrophage
1
1
4
cardiac muscle cell
1
2
1
2
choroid plexus epithelial cell
1
2
1
1
1
dermis lymphatic vessel endothelial cell
2
2
2
epithelial cell of esophagus
1
2
1
2
erythroblast
2
2
2
foreskin melanocyte
1
4
1
glutamatergic neuron
2
4
mesenchymal stem cell
1
1
1
1
1
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
3
1
olfactory receptor cell
6
pancreatic stellate cell
1
2
3
peripheral blood mononuclear cell
4
1
1
skeletal muscle fiber
2
2
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
2
1
2
Classical Dendritic Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Fibroblast
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Regulatory T Cell
3
2
T Cell
3
2
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
astrocyte of the cerebellum
1
2
1
1
astrocyte of the hippocampus
1
2
1
1
fibroblast of peridontal ligament
1
2
1
1
fibroblast of the aortic adventitia
1
2
1
1
inflammatory macrophage
1
1
3
iris pigment epithelial cell
1
2
1
1
luminal epithelial cell of mammary gland
3
1
1
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
memory B cell
2
3
mesangial cell
5
non-pigmented ciliary epithelial cell
1
2
1
1
skeletal muscle cell
1
2
1
1
smooth muscle cell of the brain vasculature
1
2
1
1
tracheal epithelial cell
2
2
1
type I muscle cell
1
1
1
1
1
type II muscle cell
1
1
1
1
1
acute myeloid leukemia cell
2
2
adult endothelial progenitor cell
1
3
aortic adventitial fibroblast
1
2
1
astrocyte of the spinal cord
1
2
1
brain microvascular endothelial cell
1
2
1
cardiac fibroblast
3
1
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
gamma-delta T cell
4
myofibroblast cell
1
3
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic endothelial cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
plasma cell
1
1
1
1
preadipocyte
2
1
1
renal epithelial cell
1
2
1
stromal cell of bone marrow
1
2
1
vascular associated smooth muscle cell
2
2
Cycling Mononuclear Phagocyte
3
Ishikawa
1
1
1
Mast Cell
3
Schwann cell
1
2
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
2
1
adipocyte
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
basal cell
1
2
blood cell
3
bone marrow cell
1
2
central memory CD8-positive, alpha-beta T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
2
1
effector memory CD8-positive, alpha-beta T cell
3
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
gabaergic neuron
2
1
leukocyte
2
1
mammary stem cell
1
1
1
meso-epithelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive B cell
2
1
neoplastic cell
1
1
1
pancreatic A cell
3
pancreatic polypeptide-secreting cell
1
2
pancreatic quiescent stellate cell
3
peripheral blood stem cell
1
1
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
smooth muscle cell of the coronary artery
1
1
1
type B pancreatic cell
3
type II pneumocyte
2
1
cardiac fibroblast
2
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
aortic endothelial cell
1
1
articular chondrocyte
2
blood vessel smooth muscle cell
2
brain pericyte
1
1
cardiac muscle myoblast
1
1
chronic lymphocytic leukemia cell
1
1
columnar chondrocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enteric smooth muscle cell
2
erythroid progenitor cell
1
1
fat cell
1
1
glial cell
1
1
goblet cell
2
head and neck squamous cell carcinoma
1
1
leukemic stem cell
1
1
mantle cell lymphoma cell
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesothelial cell
1
1
microglial cell
1
1
naive regulatory T cell
1
1
naive t cell
1
1
neural cell
1
1
neuronal stem cell
1
1
oligodendrocyte
1
1
pancreatic endocrine cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
small cell ovarian carcinoma cell
1
1
smooth muscle cell of the esophagus
2
somatic muscle myotube
1
1
thyroid follicular cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
alveolar macrophage
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
basal cell of epidermis
1
bone cell
1
cardiac atrium fibroblast
1
cardiac endothelial cell
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
ciliated cell
1
colon goblet cell
1
colorectal cancer
1
conventional dendritic cell
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
eccrine cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endocardial cell
1
endothelial cell of lymphatic vessel
1
enteric neuron
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
erythroid lineage cell
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
foveolar cell of stomach
1
granular cell of epidermis
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
intestinal tuft cell
1
luminal epithelial cell of prostatic duct
1
luteal cell
1
lymphocyte of B lineage
1
mature B cell
1
mature NK T cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
melanocyte
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
myoepithelial cell
1
natural killer cell mediated cytotoxicity
1
neural progenitor cell
1
neuron
1
neutrophil progenitor cell
1
non keratinizing barrier epithelial cell
1
non-classical monocyte
1
non-neuronal cell
1
oligodendrocyte precursor cell
1
pancreatic cell
1
pancreatic epsilon cell
1
paneth cell
1
pericardium fibroblast
1
peripheral blood
1
plasmacytoid dendritic cell
1
progenitor cell
1
quiescent pancreatic stellate cell
1
regular atrial cardiac myocyte
1
respiratory goblet cell
1
schwann cell
1
seminoma cell
1
sensory neuron
1
skeletal muscle fibroblast
1
small intestine goblet cell
1
somatic gonadal cell
1
sperm
1
stellate neuron
1
stomach neuroendocrine cell
1
stromal cell
1
type I cell of adrenal cortex
1
type I pneumocyte
1
type II cell of adrenal cortex
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
uterine smooth muscle cell
1
ventricular cardiac muscle cell
1
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