Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
138
accessible chromatin
106
target gene predictions
70
candidate regulatory elements
64
gene expression
38
chromatin state
35
differential activity
33
variant allelic effects
29
binding sites
17
histone modifications
2
caQTL
1
eQTL
Date released
125
November, 2021
106
September, 2022
83
February, 2021
60
February, 2024
36
March, 2023
20
January, 2021
20
September, 2023
17
May, 2021
10
June, 2020
7
April, 2020
7
August, 2021
7
May, 2020
6
August, 2018
6
January, 2020
5
March, 2020
5
October, 2019
5
October, 2022
3
August, 2017
2
May, 2022
1
February, 2020
1
February, 2023
1
July, 2020
Available data
396
bed bed3+
135
bigWig
87
tsv
35
bed bed9
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
txt
3
xls
2
bigBed bed9
Organism
533
Homo sapiens
Biosample type
533
primary cell
290
tissue
48
cell line
26
in vitro differentiated cells
Organ
819
epithelium
kidney
283
connective tissue
169
vasculature
126
pancreas
114
blood vessel
100
skin of body
63
liver
50
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
34
lung
31
heart
29
artery
23
eye
23
intestine
22
embryo
20
vein
17
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
361
AMP
125
ENCODE
20
KPMP
20
T1D
7
LungMap
Genome assembly (visualization)
433
hg19
200
GRCh38
organ_slims!
kidney
BIOSAMPLE
TYPE
533 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
gene expression
chromatin state
differential activity
variant allelic effects
binding sites
histone modifications
caQTL
eQTL
primary cell
endothelial cell
15
7
9
2
2
1
2
1
hepatocyte
8
3
1
13
1
2
1
4
endothelial cell of umbilical vein
2
4
6
5
1
2
foreskin keratinocyte
4
11
4
pancreatic ductal cell
6
3
3
3
1
1
2
pancreatic beta cell
8
3
3
3
1
keratinocyte
2
5
3
3
1
1
2
pancreatic alpha cell
7
3
3
3
1
endothelial cell of hepatic sinusoid
6
4
6
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
4
3
3
1
mammary gland epithelial cell
1
4
3
3
1
1
bronchial epithelial cell
1
2
4
2
2
1
dermis blood vessel endothelial cell
2
6
2
mammary epithelial cell
1
1
3
1
4
retinal pigment epithelial cell
3
1
2
1
2
1
epithelial cell of prostate
3
4
2
myoepithelial cell of mammary gland
2
4
2
choroid plexus epithelial cell
1
1
2
1
1
1
luminal epithelial cell of mammary gland
2
3
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
type II pneumocyte
4
2
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
pancreatic polypeptide-secreting cell
2
1
2
1
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Lymphatic Endothelial Cell
3
2
Transitional Principal-Intercalated Cell
3
2
brain microvascular endothelial cell
1
1
2
1
iris pigment epithelial cell
1
1
2
1
lung microvascular endothelial cell
1
3
1
non-pigmented ciliary epithelial cell
1
1
2
1
pancreatic endothelial cell
1
1
3
tracheal epithelial cell
1
2
2
aortic endothelial cell
2
1
1
endothelial cell of lymphatic vessel
3
1
mesothelial cell
2
1
1
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
type I pneumocyte
3
1
club cell
2
1
endocardial cell
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
goblet cell
1
2
meso-epithelial cell
1
1
1
pancreatic A cell
3
parietal cell
1
1
1
peptic cell
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cholangiocyte
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
myoepithelial cell
1
1
non keratinizing barrier epithelial cell
1
1
paneth cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
small intestine goblet cell
1
1
stomach neuroendocrine cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
amniotic epithelial cell
1
bronchial goblet cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
enteroendocrine cell
1
fibroblast of arm
1
gastric goblet cell
1
granulosa cell
1
intestinal epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
neuroendocrine cell
1
placental villus capillary endothelial cell
1
See all biosamples
Download