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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
842
candidate regulatory elements
464
target gene predictions
450
chromatin state
176
accessible chromatin
109
eQTL
95
gene expression
87
histone modifications
65
Fine-mapped variants
35
binding sites
35
variant allelic effects
5
differential activity
4
variant to gene
3
pQTL
2
sQTL
1
caQTL
1
other
Date released
1239
September, 2022
588
February, 2021
89
March, 2020
59
June, 2020
53
January, 2022
47
January, 2020
46
May, 2020
41
February, 2020
38
August, 2021
29
May, 2021
28
March, 2024
24
February, 2023
21
February, 2024
19
August, 2017
17
November, 2022
8
May, 2019
7
November, 2019
6
March, 2023
3
October, 2019
3
September, 2018
2
April, 2019
2
January, 2018
2
May, 2022
1
August, 2020
1
August, 2022
Available data
1658
bed bed3+
430
bed bed9
185
tsv
102
bigWig
21
bigBed bed9
1
bam
Organism
2372
Homo sapiens
Biosample type
2438
primary cell
2374
tissue
2343
cell line
469
in vitro differentiated cells
4
stem cell
Organ
349
brain
306
musculature of body
301
kidney
236
limb
232
intestine
heart
181
lung
134
large intestine
114
pancreas
108
stomach
98
extraembryonic component
95
connective tissue
84
adipose tissue
84
blood vessel
84
vasculature
80
small intestine
70
eye
ureter
62
adrenal gland
61
epithelium
60
placenta
58
liver
48
thymus
42
artery
39
gonad
36
spinal cord
35
embryo
35
esophagus
34
spleen
25
nerve
25
skin of body
22
bone element
21
ovary
20
thyroid gland
18
lymphoid tissue
18
skeleton
18
testis
15
prostate gland
13
breast
13
uterus
11
mouth
10
tongue
10
urinary bladder
10
vagina
4
bodily fluid
3
blood
3
pituitary gland
2
mammary gland
2
penis
1
vein
Project
2369
AMP
5
ITG
Genome assembly (visualization)
2199
hg19
640
GRCh38
3
hg18
organ_slims!
ureter
heart
BIOSAMPLE
TYPE
2374 results
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Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
eQTL
gene expression
histone modifications
Fine-mapped variants
binding sites
variant allelic effects
differential activity
variant to gene
pQTL
sQTL
caQTL
other
tissue
stomach
40
21
19
3
1
1
1
kidney
29
14
16
10
1
7
2
1
1
brain
29
16
18
2
2
1
3
1
1
lung
33
17
16
1
1
muscle of arm
33
16
16
1
1
small intestine
29
17
15
1
1
adrenal gland
28
17
14
1
1
1
placenta
26
15
14
1
1
2
1
muscle of leg
27
14
15
2
large intestine
27
14
13
1
1
muscle of back
28
13
13
left lung
26
13
13
liver
13
10
9
4
7
1
2
1
1
1
thymus
20
14
11
1
1
1
right lung
22
11
11
1
islet of Langerhans
1
3
6
13
11
1
2
2
1
2
2
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
retina
6
3
3
23
1
1
1
1
1
left kidney
18
9
9
spleen
15
8
6
2
1
1
1
adipose tissue
7
8
6
2
4
3
1
1
spinal cord
14
8
7
1
1
tibial nerve
6
3
4
3
2
2
3
2
body of pancreas
8
5
4
1
2
3
1
sigmoid colon
10
7
5
1
caudate nucleus
5
3
4
2
2
1
1
3
1
pancreas
5
5
3
5
1
1
1
1
ovary
8
6
4
1
1
1
subcutaneous adipose tissue
2
1
2
6
5
3
1
1
pigmented layer of retina
20
psoas muscle
7
8
4
1
thyroid gland
8
5
4
1
1
tibial artery
3
2
3
3
2
1
3
2
transverse colon
8
5
4
1
1
gastrocnemius medialis
8
5
4
1
omental fat pad
5
2
2
2
2
2
3
substantia nigra
5
2
3
3
1
1
3
testis
7
3
3
1
1
1
1
1
muscle of trunk
8
5
4
ascending aorta
4
2
3
1
1
1
3
1
cerebellum
3
2
2
1
2
2
1
3
chorionic villus
8
4
4
frontal cortex
2
2
2
2
2
2
3
1
layer of hippocampus
6
3
4
1
1
1
skeletal muscle tissue
6
3
3
2
1
1
upper lobe of left lung
7
3
3
1
1
1
endocrine pancreas
7
4
4
putamen
2
1
1
2
3
1
1
3
1
Peyer's patch
7
3
3
1
prostate gland
4
2
2
1
1
2
2
temporal lobe
5
2
5
1
1
aorta
4
4
4
1
Ammon's horn
2
2
1
2
1
1
3
left renal cortex interstitium
6
2
2
1
1
breast epithelium
5
3
2
1
esophagus muscularis mucosa
5
2
2
1
1
esophagus squamous epithelium
6
2
2
1
right renal cortex interstitium
5
2
2
1
1
thoracic aorta
4
2
3
1
1
trophoblast
4
3
2
1
1
angular gyrus
4
2
4
chorion membrane
3
3
3
1
colonic mucosa
4
2
3
1
esophagus
4
3
2
1
lower leg skin
6
2
2
vagina
4
2
2
1
1
cingulate gyrus
4
2
3
duodenal mucosa
4
2
3
eye
4
2
2
1
mucosa of rectum
4
2
3
parathyroid adenoma
5
2
2
right lobe of liver
2
1
1
1
1
3
stomach smooth muscle
4
2
3
tongue
4
2
2
1
uterus
3
2
1
1
1
1
globus pallidus
2
1
1
2
1
1
limb
3
2
2
1
midbrain
1
1
1
2
1
1
1
muscle layer of colon
4
2
2
muscle layer of duodenum
4
2
2
occipital lobe
1
1
1
2
1
1
1
urinary bladder
3
2
2
1
amygdala
2
1
1
3
gastroesophageal sphincter
5
1
1
hypothalamus
2
1
1
3
nucleus accumbens
2
1
1
3
superior temporal gyrus
1
1
1
2
1
1
Brodmann (1909) area 46
2
2
2
anterior cingulate cortex
2
1
3
cerebellum (Hemisphere)
1
1
3
1
medulla oblongata
1
1
1
2
1
middle frontal gyrus
2
1
1
1
1
pons
1
1
1
2
1
skin of body
1
1
1
3
subcutaneous abdominal adipose tissue
5
1
umbilical cord
2
1
1
1
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
2
1
2
cerebellar cortex
2
1
1
1
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
germinal matrix
2
1
2
amnion
2
1
1
bone tissue
4
cortex of kidney
1
1
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
embryonic facial prominence
1
1
1
1
femur
2
1
1
inferior parietal cortex
1
1
1
1
mucosa of stomach
2
1
1
rectum smooth muscle tissue
1
1
2
visceral abdominal adipose tissue
1
2
1
arm bone
1
1
1
dorsolateral prefrontal cortex
1
1
1
germinal center
1
1
1
leg bone
1
1
1
prefrontal cortex
1
1
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
fallopian tube
1
1
first pancreatic bud
1
1
forelimb muscle
1
1
kidney epithelium
1
1
mammary gland
1
1
middle frontal area 46
2
minor salivary gland
1
1
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
placental basal plate
2
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tissue-resident macrophage
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
whole blood
1
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