Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
232
gene expression
184
accessible chromatin
104
target gene predictions
79
differential activity
74
candidate regulatory elements
39
chromatin state
36
variant allelic effects
27
binding sites
23
histone modifications
3
eQTL
2
caQTL
Date released
169
February, 2021
130
September, 2023
115
September, 2022
111
November, 2021
61
February, 2024
34
March, 2023
33
May, 2021
23
August, 2021
21
June, 2020
20
January, 2021
15
November, 2022
12
February, 2023
10
May, 2020
9
January, 2020
8
February, 2020
6
August, 2018
5
March, 2020
5
October, 2019
4
April, 2020
4
October, 2022
2
August, 2017
2
March, 2024
2
May, 2022
1
July, 2020
1
November, 2019
Available data
450
bed bed3+
291
tsv
152
bigWig
78
txt
37
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
Organism
803
Homo sapiens
Biosample type
682
primary cell
61
tissue
36
cell line
24
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
536
AMP
130
KPMP
111
ENCODE
20
T1D
4
LungMap
2
community
Genome assembly (visualization)
490
hg19
186
GRCh38
organ_slims!
adrenal gland
vasculature
bone marrow
BIOSAMPLE
TYPE
803 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
differential activity
candidate regulatory elements
chromatin state
variant allelic effects
binding sites
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
8
3
1
1
2
1
4
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
foreskin keratinocyte
4
11
4
+ See 121 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
2
esophagus squamous epithelium
1
2
6
2
kidney epithelium
1
1
pancreatic ductal cell
2
+ See 15 more…
cell line
EndoC_BH1
8
8
1
3
1
keratinocyte
3
1
colon epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
glomerular visceral epithelial cell
1
1
+ See 3 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 3 more…
See all biosamples
Download