Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
139
candidate regulatory elements
95
target gene predictions
87
chromatin state
53
histone modifications
49
accessible chromatin
36
Fine-mapped variants
29
eQTL
28
binding sites
19
gene expression
18
variant allelic effects
Date released
222
September, 2022
138
February, 2021
38
March, 2020
29
January, 2020
25
June, 2020
19
May, 2020
18
February, 2020
18
January, 2022
13
May, 2021
9
October, 2022
7
August, 2017
6
November, 2021
4
May, 2019
3
September, 2023
2
February, 2024
1
March, 2024
1
November, 2019
Available data
382
bed bed3+
80
bed bed9
67
tsv
24
bigWig
6
bigBed bed9
Organism
552
Homo sapiens
Biosample type
351
tissue
113
cell line
81
primary cell
7
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
547
AMP
6
ENCODE
Genome assembly (visualization)
510
hg19
172
GRCh38
organ_slims!
artery
stomach
BIOSAMPLE
TYPE
553 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
histone modifications
accessible chromatin
Fine-mapped variants
eQTL
binding sites
gene expression
variant allelic effects
tissue
brain
29
16
18
3
2
2
1
1
1
caudate nucleus
5
3
4
1
2
3
2
1
1
substantia nigra
5
2
3
1
3
3
1
cerebellum
3
2
2
1
1
3
2
2
frontal cortex
2
2
2
2
3
2
2
1
+ See 57 more…
cell line
MCF-7
9
6
5
2
1
3
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 12 more…
primary cell
mammary gland epithelial cell
3
4
3
1
1
1
mammary epithelial cell
3
1
1
1
4
fibroblast of mammary gland
2
1
1
1
1
2
myoepithelial cell of mammary gland
4
2
2
choroid plexus epithelial cell
2
1
1
1
1
1
+ See 9 more…
in vitro differentiated cells
mammary gland epithelial cell
1
1
1
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download