Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1556
candidate regulatory elements
1256
target gene predictions
946
histone modifications
790
accessible chromatin
772
binding sites
102
variant allelic effects
32
chromatin state
9
caQTL
7
eQTL
3
hQTL
2
meQTL
2
other
2
variant to gene
1
pQTL
1
sQTL
Date released
2293
February, 2021
1561
September, 2022
280
November, 2021
269
February, 2024
269
May, 2021
265
June, 2020
118
May, 2020
88
October, 2022
54
January, 2021
52
January, 2020
50
August, 2021
39
March, 2020
34
November, 2022
27
February, 2023
26
August, 2017
14
April, 2020
12
May, 2022
10
November, 2019
8
October, 2019
5
January, 2022
3
September, 2023
1
April, 2019
1
August, 2020
1
August, 2022
1
September, 2018
Available data
5481
bed bed3+
803
bed bed9
788
tsv
468
bigWig
101
txt
34
bed bed9+
30
bigBed bed9
24
csv
15
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5435
Homo sapiens
Biosample type
2092
cell line
1754
tissue
1327
primary cell
303
in vitro differentiated cells
3
stem cell
Organ
547
epithelium
connective tissue
309
brain
309
kidney
281
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
175
limb
173
heart
165
skin of body
163
vasculature
159
pancreas
137
large intestine
blood vessel
112
extraembryonic component
101
liver
98
eye
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
46
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5129
AMP
280
ENCODE
58
T1D
14
LungMap
Genome assembly (visualization)
5476
hg19
706
GRCh38
1
hg18
organ_slims!
connective tissue
blood vessel
BIOSAMPLE
TYPE
5481 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
variant to gene
pQTL
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
+ See 746 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
kidney
29
14
2
10
1
1
1
brain
29
16
3
2
1
1
muscle of arm
33
16
1
1
+ See 202 more…
primary cell
monocyte
2
86
18
1
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
endothelial cell
7
1
15
2
2
2
1
+ See 279 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
T-cell acute lymphoblastic leukemia
5
3
embryonic stem cell
1
1
5
1
neuroblastoma cell line
6
2
+ See 92 more…
stem cell
H1-hESC
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download