Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
134
candidate regulatory elements
119
target gene predictions
98
accessible chromatin
89
chromatin state
63
gene expression
54
histone modifications
44
eQTL
41
Fine-mapped variants
27
differential activity
25
variant allelic effects
20
binding sites
2
sQTL
2
variant to gene
Date released
224
September, 2022
140
February, 2021
47
March, 2020
42
May, 2021
40
March, 2023
29
January, 2020
24
February, 2024
24
June, 2020
22
January, 2022
22
May, 2020
20
February, 2020
18
January, 2021
18
November, 2021
9
August, 2017
8
August, 2021
6
August, 2018
6
October, 2019
5
October, 2022
4
May, 2019
3
November, 2019
3
September, 2023
1
April, 2019
1
February, 2023
1
January, 2018
1
March, 2024
Available data
453
bed bed3+
134
tsv
79
bed bed9
70
bigWig
13
bigBed narrowPeak
8
bigBed bed9
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
717
Homo sapiens
Biosample type
461
tissue
139
primary cell
110
cell line
7
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
connective tissue
375
musculature of body
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
680
AMP
18
ENCODE
18
T1D
2
community
Genome assembly (visualization)
594
hg19
207
GRCh38
organ_slims!
connective tissue
lung
BIOSAMPLE
TYPE
718 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
gene expression
histone modifications
eQTL
Fine-mapped variants
differential activity
variant allelic effects
binding sites
sQTL
variant to gene
tissue
brain
29
16
2
18
1
3
2
1
1
islet of Langerhans
1
6
3
11
1
13
2
1
2
2
2
body of pancreas
8
5
4
2
1
3
1
caudate nucleus
5
3
2
4
1
1
2
3
1
pancreas
5
5
5
3
1
1
1
1
+ See 66 more…
primary cell
pancreatic ductal cell
3
6
3
2
3
1
1
pancreatic beta cell
3
8
3
3
1
pancreatic alpha cell
3
7
3
3
1
pancreatic acinar cell
3
6
3
3
1
pancreatic delta cell
4
5
3
3
1
+ See 14 more…
cell line
EndoC_BH1
1
8
8
3
1
SK-N-DZ
4
2
1
2
1
SK-N-SH
4
3
2
1
pituitary stalk
10
SK-N-MC
2
1
1
1
1
2
+ See 14 more…
in vitro differentiated cells
pancreatic ductal cell
3
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download