Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1514
candidate regulatory elements
1200
target gene predictions
943
histone modifications
771
binding sites
686
accessible chromatin
86
variant allelic effects
37
chromatin state
11
caQTL
8
eQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2266
February, 2021
1511
September, 2022
265
May, 2021
258
June, 2020
235
February, 2024
204
November, 2021
123
May, 2020
94
October, 2022
54
January, 2020
43
March, 2020
41
August, 2021
36
January, 2021
31
August, 2017
26
November, 2022
20
February, 2023
13
May, 2022
12
April, 2020
12
November, 2019
5
January, 2022
5
September, 2023
4
October, 2019
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5268
bed bed3+
787
bed bed9
576
tsv
368
bigWig
38
bigBed bed9
34
bed bed9+
30
txt
18
csv
2
bigBed narrowPeak
1
bam
Organism
5222
Homo sapiens
Biosample type
2092
cell line
1722
tissue
1122
primary cell
326
in vitro differentiated cells
4
stem cell
Organ
epithelium
330
connective tissue
309
brain
309
kidney
281
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
175
limb
173
heart
165
skin of body
163
vasculature
159
pancreas
137
large intestine
123
blood vessel
extraembryonic component
101
liver
98
eye
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
46
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5011
AMP
204
ENCODE
40
T1D
12
LungMap
1
ITG
Genome assembly (visualization)
5261
hg19
623
GRCh38
1
hg18
organ_slims!
epithelium
extraembryonic component
breast
BIOSAMPLE
TYPE
5268 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
1
H1-hESC
1
39
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 749 more…
tissue
heart
37
20
1
1
5
2
stomach
40
21
1
3
kidney
29
14
2
1
10
1
1
brain
29
16
3
1
2
1
muscle of arm
33
16
1
1
+ See 194 more…
primary cell
monocyte
2
86
1
18
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
CD14-positive monocyte
8
19
+ See 224 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
4
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 97 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download