Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
75
target gene predictions
29
candidate regulatory elements
19
chromatin state
12
histone modifications
10
binding sites
9
eQTL
7
accessible chromatin
5
gene expression
3
Fine-mapped variants
1
caQTL
1
differential activity
1
variant allelic effects
Date released
52
February, 2024
52
September, 2022
29
February, 2021
7
August, 2021
6
June, 2020
6
March, 2020
4
May, 2021
3
August, 2017
2
February, 2020
2
January, 2022
2
March, 2024
2
May, 2022
2
October, 2022
1
January, 2020
1
May, 2020
1
November, 2021
Available data
142
bed bed3+
16
bed bed9
10
tsv
bigWig
1
bam
1
bigBed bed9
Organism
172
Homo sapiens
Biosample type
92
cell line
69
tissue
11
primary cell
Organ
epithelium
616
kidney
445
brain
405
connective tissue
359
musculature of body
302
lung
278
intestine
235
vasculature
233
heart
230
limb
220
pancreas
218
bodily fluid
213
embryo
207
blood
199
skin of body
181
blood vessel
171
large intestine
143
extraembryonic component
133
liver
114
stomach
84
adipose tissue
84
mammary gland
82
small intestine
82
uterus
79
bone element
78
prostate gland
73
eye
71
placenta
67
adrenal gland
66
artery
64
penis
62
lymph node
61
ureter
49
gonad
48
thymus
43
esophagus
43
spinal cord
33
spleen
26
testis
24
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
22
vein
19
mouth
18
lymphatic vessel
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
skeleton
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
171
AMP
1
ENCODE
Genome assembly (visualization)
161
hg19
78
GRCh38
2
hg18
organ_slims!
epithelium
files.file_type!
bigWig
BIOSAMPLE
TYPE
172 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
histone modifications
binding sites
eQTL
accessible chromatin
gene expression
Fine-mapped variants
caQTL
differential activity
variant allelic effects
cell line
HeLa-S3
55
5
3
1
HepG2
3
2
2
5
3
1
HuH-7
1
1
1
1
1
1
HuH-7.5
1
1
1
hepatic stellate cell
1
1
+ See 1 more…
tissue
liver
10
13
9
2
1
7
2
1
1
1
right lobe of liver
1
2
1
1
1
3
uterus
2
3
1
1
1
1
endometrium cancer
1
1
cervix - ectocervix
1
+ See 1 more…
primary cell
hepatic stellate cell
1
1
1
1
1
1
1
Ishikawa
1
1
1
uterine smooth muscle cell
1
See all biosamples
Download