Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
178
chromatin state
168
target gene predictions
10
eQTL
4
histone modifications
3
accessible chromatin
Date released
182
September, 2022
168
February, 2024
10
January, 2022
2
February, 2021
January, 2020
1
November, 2019
Available data
178
bed bed9
175
bed bed3+
3
bigWig
Organism
363
Homo sapiens
Biosample type
673
primary cell
667
tissue
363
cell line
63
in vitro differentiated cells
Organ
61
embryo
54
uterus
53
bodily fluid
51
blood
23
lung
14
skin of body
11
brain
10
bone element
9
prostate gland
8
liver
8
lymph node
7
kidney
7
mammary gland
6
intestine
6
large intestine
4
pancreas
4
penis
3
connective tissue
3
musculature of body
2
epithelium
2
lymphoid tissue
1
artery
1
blood vessel
extraembryonic component
1
eye
1
gonad
1
heart
1
limb
1
mouth
1
placenta
1
testis
1
vasculature
Project
363
AMP
Genome assembly (visualization)
2306
hg19
363
GRCh38
1
hg18
organ_slims!
extraembryonic component
month_released!
January, 2020
BIOSAMPLE
TYPE
363 results
search-icon
table-tab-icon
Clear Filters
chromatin state
target gene predictions
eQTL
histone modifications
accessible chromatin
cell line
HeLa-S3
3
51
H1-hESC
1
37
K562
6
16
HFFc6
19
A549
18
GM12878
1
6
H9
1
6
lymphocyte
1
6
HepG2
1
4
1
iPSC derived cell line
4
2
lymphoblastoid cell line
6
MCF-7
5
CyT49
4
HUES8
4
HCT116
1
2
endometrium adenocarcinoma
3
immortal human breast epithelial cell line cell
3
22Rv1
2
GM18507
1
1
GM19238
1
1
GM19239
1
1
GM19240
1
1
LNCaP clone FGC
2
NAMALWA cell
2
SK-N-DZ
2
SK-N-SH
2
T47D
2
muscle
2
8988T
1
A172
1
A673
1
ACC112
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08395 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AG20443
1
BE(2)-C
1
BJ cell
1
C4-2B
1
CMK
1
COLO829
1
CWRU1
1
Caco-2 cell
1
Caki2
1
DND-41
1
DOHH2
1
Daoy
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
EndoC_BH1
1
G401
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM08714
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12875
1
GM12891
1
GM12892
1
GM18486
1
GM18505
1
GM18508
1
GM18516
1
GM18522
1
GM19099
1
GM19141
1
GM19193
1
GM19204
1
GM23248
1
GM23338
1
H4
1
H54
1
H7-hESC
1
HAP-1
1
HEK293
1
HEK293T
1
HK-2 cell
1
HL-60
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT-29
1
HT1080
1
HUES48
1
HUES6
1
HUES64
1
HuH-7
1
HuH-7.5
1
IMR-90
1
KARPAS-422 cell
1
KBM-7
1
KMS-11
1
KOPT-K1
1
L1-S8
1
L1-S8R
1
LHCN-M2
1
LoVo cell
1
Loucy
1
M059J
1
MG63
1
MM.1S
1
NB4
1
NCI-H226 cell
1
NCI-H460 cell
1
NCI-H929
1
NT2-D1 cell
1
OCI-LY1
1
OCI-LY3
1
OCI-LY7
1
PC-3
1
PC-9
1
Panc1
1
RCC 7860
1
RPMI7951
1
RPMI8226
1
RWPE1
1
RWPE2
1
SJCRH30
1
SJSA1
1
SK-MEL-5
1
SK-N-MC
1
SU-DHL-6
1
SW480
1
UCSF-4
1
VCaP cell
1
WERI-Rb-1
1
WI38
1
colon carcinoma
1
colon epithelial cell
1
foreskin fibroblast
1
iPS DF 19.11
1
iPS DF 19.7
1
iPS DF 4.7 Cell Line
1
iPS DF 6.9
1
iPS-11a
1
iPS-15b
1
iPS-18a
1
iPS-18c
1
iPS-20b
1
iPS-NIHi11
1
iPS-NIHi7
1
medulloblastoma
1
renal cell carcinoma
1
smooth muscle cell of the coronary artery
1
urothelium cell line
1
See all biosamples
Download