Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1494
candidate regulatory elements
988
target gene predictions
862
histone modifications
798
binding sites
471
gene expression
445
accessible chromatin
122
variant allelic effects
111
differential activity
75
chromatin state
42
eQTL
6
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
2
Fine-mapped variants
1
representative DNase hypersensitivity sites
Date released
2374
February, 2021
1504
September, 2022
292
May, 2021
268
June, 2020
160
February, 2024
146
September, 2023
126
May, 2020
95
October, 2022
74
August, 2021
70
March, 2023
56
January, 2021
53
March, 2020
43
May, 2022
35
August, 2017
29
February, 2020
28
March, 2024
22
November, 2022
21
January, 2020
19
April, 2020
9
August, 2018
2
February, 2023
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
January, 2022
1
July, 2020
1
June, 2021
1
November, 2019
1
November, 2020
1
October, 2019
Available data
4749
bed bed3+
542
tsv
126
bigWig
34
bed bed9+
24
csv
21
txt
16
bigBed narrowPeak
9
bigBed bed9
5
bed bed9
4
bam
3
bed gappedPeak
3
xls
Organism
5393
Homo sapiens
Biosample type
1945
cell line
1632
tissue
1459
primary cell
398
in vitro differentiated cells
4
stem cell
Organ
715
epithelium
kidney
338
connective tissue
314
brain
279
musculature of body
231
lung
216
pancreas
210
intestine
179
vasculature
166
limb
165
bodily fluid
162
heart
157
skin of body
156
blood
135
embryo
131
large intestine
130
blood vessel
109
extraembryonic component
96
liver
eye
86
stomach
67
mammary gland
66
adipose tissue
66
bone element
64
prostate gland
60
small intestine
54
lymph node
54
penis
54
placenta
48
adrenal gland
48
ureter
47
artery
37
gonad
37
thymus
31
esophagus
30
spinal cord
26
spleen
25
uterus
20
testis
18
lymphoid tissue
18
vein
16
lymphatic vessel
16
ovary
16
thyroid gland
14
mouth
14
nerve
12
bronchus
12
pituitary gland
11
bone marrow
10
breast
8
tongue
8
urinary bladder
7
skeleton
7
vagina
5
trachea
3
nose
1
pericardium
Project
5207
AMP
141
KPMP
57
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
6470
hg19
GRCh38
4
hg18
organ_slims!
eye
kidney
assembly!
GRCh38
BIOSAMPLE
TYPE
5440 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
variant allelic effects
differential activity
chromatin state
eQTL
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
Fine-mapped variants
representative DNase hypersensitivity sites
cell line
A549
21
19
1
2
1
EndoC_BH1
1
1
1
8
7
1
3
MCF-7
9
6
2
3
1
breast cancer cell
11
9
K562
7
7
1
2
1
1
+ See 742 more…
tissue
heart
37
20
1
1
3
2
2
stomach
40
21
1
1
3
brain
29
16
3
1
1
1
1
lung
33
17
1
muscle of arm
33
16
1
+ See 211 more…
primary cell
CD8-positive, alpha-beta T cell
7
4
30
3
3
1
common myeloid progenitor, CD34-positive
27
14
monocyte
2
2
1
15
5
1
2
1
1
B cell
14
10
2
3
CD14-positive monocyte
8
19
+ See 315 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
4
4
neural progenitor cell
5
5
2
7
embryonic stem cell
1
1
1
6
5
cardiomyocytes
11
+ See 118 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download