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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1629
candidate regulatory elements
1304
target gene predictions
967
histone modifications
806
binding sites
789
accessible chromatin
634
gene expression
153
eQTL
134
differential activity
127
variant allelic effects
71
chromatin state
69
Fine-mapped variants
13
caQTL
5
hQTL
3
meQTL
3
other
3
pQTL
3
sQTL
2
variant to gene
1
representative DNase hypersensitivity sites
Date released
2542
February, 2021
1629
September, 2022
352
February, 2024
351
May, 2021
311
November, 2021
286
September, 2023
279
June, 2020
144
May, 2020
120
August, 2021
119
March, 2020
102
January, 2022
99
October, 2022
77
January, 2020
60
February, 2020
49
May, 2022
36
January, 2021
32
August, 2017
30
March, 2024
23
March, 2023
22
November, 2022
19
April, 2020
11
November, 2019
7
February, 2023
3
November, 2020
3
October, 2019
3
September, 2018
2
August, 2018
1
August, 2020
1
August, 2022
1
January, 2018
1
July, 2020
Available data
5666
bed bed3+
bed bed9
820
tsv
453
bigWig
108
txt
38
bigBed bed9
34
bed bed9+
21
csv
2
bigBed narrowPeak
1
bam
Organism
6668
Homo sapiens
Biosample type
2159
primary cell
2133
cell line
1997
tissue
421
in vitro differentiated cells
4
stem cell
Organ
899
epithelium
575
kidney
417
connective tissue
400
brain
304
musculature of body
pancreas
241
lung
234
intestine
234
vasculature
209
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
142
liver
141
large intestine
113
extraembryonic component
eye
96
stomach
81
adipose tissue
79
uterus
75
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
6053
AMP
311
ENCODE
281
KPMP
40
T1D
19
LungMap
7
community
5
ITG
Genome assembly (visualization)
5824
hg19
952
GRCh38
4
hg18
organ_slims!
eye
pancreas
files.file_type!
bed bed9
BIOSAMPLE
TYPE
6716 results
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table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
gene expression
eQTL
differential activity
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
meQTL
other
pQTL
sQTL
variant to gene
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
1
18
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
1
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
2
15
9
1
2
2
B cell
14
10
6
2
+ See 425 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
1
8
A549
21
19
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 757 more…
tissue
heart
37
20
1
1
5
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
1
10
7
1
1
brain
29
16
3
1
2
1
2
1
lung
33
17
1
1
+ See 246 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
4
1
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 119 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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