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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
474
accessible chromatin
368
target gene predictions
320
candidate regulatory elements
209
histone modifications
98
binding sites
75
variant allelic effects
11
caQTL
6
chromatin state
5
eQTL
3
hQTL
2
meQTL
1
other
Date released
329
November, 2021
328
February, 2021
319
September, 2022
179
May, 2021
103
February, 2024
80
May, 2020
56
January, 2021
50
June, 2020
30
October, 2022
20
January, 2020
19
April, 2020
16
August, 2021
13
May, 2022
9
November, 2022
6
August, 2017
5
October, 2019
4
February, 2023
2
January, 2022
2
November, 2020
1
June, 2021
1
March, 2020
Available data
1572
bed bed3+
591
tsv
405
bigWig
160
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1527
Homo sapiens
Biosample type
2113
cell line
1764
tissue
1572
primary cell
341
in vitro differentiated cells
4
stem cell
Organ
445
epithelium
208
connective tissue
104
vasculature
83
skin of body
71
blood vessel
70
pancreas
52
kidney
41
musculature of body
39
mammary gland
38
liver
35
penis
32
extraembryonic component
31
brain
30
lung
24
heart
23
intestine
20
artery
eye
18
embryo
15
vein
14
bronchus
12
bone element
11
adrenal gland
11
bone marrow
11
stomach
10
lymphatic vessel
9
blood
9
bodily fluid
9
esophagus
9
placenta
8
prostate gland
6
large intestine
5
trachea
5
uterus
4
small intestine
3
gonad
3
mouth
spinal cord
3
thyroid gland
2
ovary
1
limb
1
thymus
Project
1165
AMP
329
ENCODE
59
T1D
19
LungMap
Genome assembly (visualization)
1566
hg19
494
GRCh38
organ_slims!
eye
spinal cord
BIOSAMPLE
TYPE
1572 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
binding sites
variant allelic effects
caQTL
chromatin state
eQTL
hQTL
meQTL
other
primary cell
monocyte
18
2
86
1
1
1
CD8-positive, alpha-beta T cell
4
5
7
30
common myeloid progenitor, CD34-positive
14
27
B cell
6
10
14
endothelial cell
15
7
1
2
2
2
1
CD14-positive monocyte
19
8
fibroblast
16
4
1
6
CD4-positive, alpha-beta memory T cell
9
14
pericyte cell
10
10
1
hepatocyte
8
3
1
4
1
2
macrophage
12
3
3
1
smooth muscle cell
9
6
2
1
1
T cell
6
4
4
2
regulatory T cell
5
4
5
1
1
CD8-positive, alpha-beta memory T cell
7
8
astrocyte
8
4
2
1
endothelial cell of umbilical vein
2
4
6
2
1
foreskin fibroblast
1
2
6
2
4
foreskin keratinocyte
4
11
keratinocyte
2
5
3
2
1
1
1
natural killer cell
3
5
6
1
mononuclear cell
6
7
1
osteoblast
5
2
2
2
3
trophoblast cell
1
5
7
1
fibroblast of lung
4
6
2
1
mammary epithelial cell
1
1
3
3
4
1
CD4-positive, alpha-beta T cell
1
3
8
T-helper 1 cell
3
3
6
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
pancreatic beta cell
8
3
1
pancreatic ductal cell
5
3
2
1
1
skeletal muscle myoblast
2
2
4
1
2
1
pancreatic alpha cell
7
3
1
T-helper 17 cell
2
3
5
T-helper 2 cell
2
3
5
bronchial epithelial cell
1
2
4
1
2
mammary gland epithelial cell
1
4
3
1
1
neurosphere
3
7
pancreatic delta cell
5
4
1
erythroblast
5
2
2
fibroblast of cardiac tissue
2
4
3
fibroblast of dermis
4
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
1
1
neutrophil
3
4
1
1
pancreatic acinar cell
5
3
1
skeletal muscle satellite cell
5
2
2
dermis blood vessel endothelial cell
2
6
glutamatergic neuron
6
2
cardiac muscle cell
1
1
2
1
2
epithelial cell of prostate
3
4
fibroblast of mammary gland
1
1
2
1
2
fibroblast of pulmonary artery
1
1
2
1
2
fibroblast of villous mesenchyme
1
1
2
1
2
kidney tubule cell
2
2
3
skeletal muscle fiber
5
2
skin fibroblast
2
3
2
type II pneumocyte
4
2
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
T-cell
2
4
choroid plexus epithelial cell
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
epithelial cell of proximal tubule
1
1
2
1
1
fibroblast of breast
2
4
hepatic stellate cell
3
1
1
1
luminal epithelial cell of mammary gland
2
3
1
memory B cell
4
2
myoepithelial cell of mammary gland
2
4
naive T cell
3
3
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
1
1
2
1
1
renal cortical epithelial cell
2
1
2
1
type I muscle cell
3
1
1
1
type II muscle cell
3
1
1
1
cardiac fibroblast
3
2
CD4-positive helper T cell
1
2
2
astrocyte of the cerebellum
1
1
2
1
astrocyte of the hippocampus
1
1
2
1
basal cell
2
1
2
epithelial cell of esophagus
1
2
2
foreskin melanocyte
1
4
gabaergic neuron
3
2
glomerular endothelial cell
1
1
2
1
glomerular visceral epithelial cell
2
1
2
inhibitory neuron
5
kidney epithelial cell
1
1
2
1
kidney glomerular epithelial cell
2
1
2
mast cell
1
1
1
1
1
mesenchymal stem cell
2
1
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
plasma cell
2
1
1
1
skeletal muscle cell
1
1
2
1
smooth muscle cell of the brain vasculature
1
1
2
1
tracheal epithelial cell
1
2
2
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
1
1
2
cardiac fibroblast
3
1
dermis lymphatic vessel endothelial cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
2
fibroblast of the aortic adventitia
1
2
1
lung microvascular endothelial cell
1
3
megakaryocyte
2
2
mesothelial cell
2
1
1
non-pigmented ciliary epithelial cell
1
1
2
pancreatic polypeptide-secreting cell
2
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
adipocyte
2
1
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
erythroid cell
1
1
1
fibroblast of gingiva
1
2
goblet cell
1
2
kidney capillary endothelial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic stellate cell
2
1
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
schwann cell
2
1
stromal cell of bone marrow
1
2
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
leukocyte
2
luteal cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
mature neutrophil
1
1
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
1
1
microglial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
smooth muscle cell of the coronary artery
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
inflammatory macrophage
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
neural cell
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
seminoma cell
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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