Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
185
accessible chromatin
111
target gene predictions
82
gene expression
candidate regulatory elements
42
chromatin state
38
binding sites
38
differential activity
32
variant allelic effects
26
histone modifications
2
caQTL
1
eQTL
Date released
125
November, 2021
81
September, 2022
75
February, 2024
65
February, 2021
38
March, 2023
34
May, 2021
20
January, 2021
20
September, 2023
17
June, 2020
15
November, 2022
12
February, 2023
7
April, 2020
7
August, 2021
6
August, 2018
6
March, 2020
6
May, 2020
5
October, 2019
4
January, 2020
4
October, 2022
3
August, 2017
2
March, 2024
2
May, 2022
1
February, 2020
1
July, 2020
1
November, 2019
Available data
395
bed bed3+
157
bigWig
106
tsv
39
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
txt
3
xls
2
bigBed bed9
Organism
557
Homo sapiens
Biosample type
453
primary cell
43
tissue
37
cell line
24
in vitro differentiated cells
Organ
849
epithelium
kidney
380
connective tissue
brain
253
pancreas
229
musculature of body
216
vasculature
185
heart
180
lung
176
intestine
171
bodily fluid
165
blood vessel
164
blood
158
embryo
150
limb
133
liver
129
skin of body
105
large intestine
91
eye
87
extraembryonic component
74
uterus
70
adipose tissue
68
stomach
65
artery
64
bone element
59
mammary gland
51
prostate gland
47
small intestine
45
adrenal gland
44
placenta
41
lymph node
36
penis
33
gonad
33
ureter
29
thymus
28
esophagus
27
spinal cord
19
nerve
19
spleen
17
lymphatic vessel
17
testis
17
vein
15
lymphoid tissue
15
ovary
15
thyroid gland
14
skeleton
13
pituitary gland
12
bronchus
11
bone marrow
11
mouth
8
breast
7
urinary bladder
6
tongue
6
vagina
5
trachea
3
nose
1
pericardium
Project
383
AMP
125
ENCODE
20
KPMP
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
436
hg19
211
GRCh38
organ_slims!
kidney
brain
annotation_type!
candidate regulatory elements
BIOSAMPLE
TYPE
557 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
gene expression
chromatin state
binding sites
differential activity
variant allelic effects
histone modifications
caQTL
eQTL
primary cell
endothelial cell
15
7
9
2
2
1
2
1
hepatocyte
8
3
13
1
1
2
4
pancreatic ductal cell
6
3
3
1
3
1
2
pancreatic beta cell
8
3
3
3
1
pancreatic alpha cell
7
3
3
3
1
+ See 81 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
2
esophagus squamous epithelium
1
2
2
pancreatic ductal cell
2
breast - mammary tissue
1
+ See 9 more…
cell line
EndoC_BH1
8
1
8
3
1
keratinocyte
3
1
epithelial cell of prostate
1
1
1
colon epithelial cell
1
1
dermis lymphatic vessel endothelial cell
1
1
+ See 4 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
pancreatic ductal cell
3
+ See 4 more…
See all biosamples
Download