Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
212
accessible chromatin
129
target gene predictions
109
candidate regulatory elements
43
binding sites
38
variant allelic effects
28
histone modifications
3
chromatin state
2
caQTL
2
eQTL
Date released
131
November, 2021
116
February, 2021
111
September, 2022
58
February, 2024
25
June, 2020
20
January, 2021
17
May, 2021
15
November, 2022
12
January, 2020
12
May, 2020
11
August, 2021
11
February, 2023
7
April, 2020
6
October, 2022
5
October, 2019
3
August, 2017
3
March, 2020
2
May, 2022
1
November, 2019
Available data
566
bed bed3+
325
tsv
178
bigWig
78
txt
54
bed bed9
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
566
Homo sapiens
Biosample type
449
primary cell
69
tissue
31
cell line
17
in vitro differentiated cells
Organ
547
epithelium
330
connective tissue
309
brain
309
kidney
281
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
limb
173
heart
165
skin of body
163
vasculature
159
pancreas
137
large intestine
123
blood vessel
112
extraembryonic component
101
liver
98
eye
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
46
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
408
AMP
131
ENCODE
20
T1D
7
LungMap
Genome assembly (visualization)
565
hg19
179
GRCh38
organ_slims!
limb
BIOSAMPLE
TYPE
566 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
binding sites
variant allelic effects
histone modifications
chromatin state
caQTL
eQTL
primary cell
endothelial cell
15
7
2
2
1
2
1
hepatocyte
8
3
1
1
2
4
endothelial cell of umbilical vein
2
4
6
2
1
foreskin keratinocyte
4
11
keratinocyte
2
5
3
1
1
2
1
+ See 95 more…
tissue
pigmented layer of retina
20
breast epithelium
1
3
5
esophagus squamous epithelium
1
2
6
esophagus muscularis mucosa
1
2
5
esophagus
3
4
+ See 14 more…
cell line
EndoC_BH1
8
1
1
keratinocyte
3
1
choroid plexus epithelial cell
1
1
1
epithelial cell of prostate
1
1
1
colon epithelial cell
1
1
+ See 6 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
foreskin keratinocyte
1
1
1
hepatocyte
1
2
mammary gland epithelial cell
1
1
1
dermis microvascular lymphatic vessel endothelial cell
1
1
See all biosamples
Download