Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
536
accessible chromatin
530
gene expression
435
target gene predictions
403
candidate regulatory elements
299
histone modifications
239
chromatin state
149
differential activity
131
binding sites
84
variant allelic effects
46
eQTL
11
caQTL
5
hQTL
3
meQTL
3
sQTL
2
other
1
representative DNase hypersensitivity sites
Date released
637
February, 2021
583
September, 2022
328
November, 2021
294
May, 2021
286
September, 2023
156
February, 2024
90
May, 2020
72
June, 2020
70
August, 2021
56
January, 2021
51
March, 2023
40
January, 2022
40
May, 2022
31
October, 2022
27
November, 2022
24
January, 2020
19
April, 2020
16
February, 2020
13
March, 2020
11
August, 2017
9
August, 2018
9
October, 2019
5
February, 2023
3
November, 2019
3
November, 2020
2
May, 2024
1
June, 2021
1
March, 2024
Available data
1907
bed bed3+
645
tsv
402
bigWig
201
bed bed9
108
txt
27
bed bed9+
21
csv
16
bigBed narrowPeak
9
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2831
Homo sapiens
Biosample type
tissue
2408
primary cell
cell line
463
in vitro differentiated cells
4
stem cell
Organ
845
epithelium
334
connective tissue
310
kidney
171
vasculature
129
pancreas
114
blood vessel
109
skin of body
liver
53
embryo
52
musculature of body
49
mammary gland
47
penis
45
extraembryonic component
40
brain
34
lung
32
heart
29
artery
29
eye
23
intestine
20
vein
19
lymphatic vessel
16
bronchus
14
bone element
13
bone marrow
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
nose
4
small intestine
4
spinal cord
3
thyroid gland
2
adipose tissue
2
ovary
1
limb
1
pericardium
1
testis
1
thymus
Project
2187
AMP
328
ENCODE
281
KPMP
60
T1D
19
LungMap
2
community
Genome assembly (visualization)
2152
hg19
735
GRCh38
organ_slims!
liver
biosample_type!
cell line
tissue
BIOSAMPLE
TYPE
2877 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
variant allelic effects
eQTL
caQTL
hQTL
meQTL
sQTL
other
representative DNase hypersensitivity sites
primary cell
monocyte
18
15
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
3
5
7
30
1
B cell
6
2
10
14
8
endothelial cell
15
9
7
1
2
2
1
2
+ See 445 more…
in vitro differentiated cells
neural progenitor cell
10
7
5
5
15
4
hematopoietic multipotent progenitor cell
1
1
10
19
1
10
1
adipocyte
4
1
6
4
1
6
1
embryonic stem cell
6
1
1
5
1
cardiomyocytes
11
+ See 119 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download