Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
895
candidate regulatory elements
490
target gene predictions
487
chromatin state
191
accessible chromatin
107
gene expression
106
eQTL
85
histone modifications
71
Fine-mapped variants
48
variant allelic effects
33
binding sites
4
differential activity
4
variant to gene
3
pQTL
2
sQTL
1
caQTL
1
other
Date released
1311
September, 2022
614
February, 2021
98
March, 2020
61
January, 2020
60
June, 2020
59
May, 2020
54
January, 2022
46
February, 2020
40
August, 2021
29
May, 2021
27
March, 2024
26
February, 2023
25
February, 2024
17
August, 2017
17
November, 2022
9
May, 2019
9
November, 2019
8
April, 2019
6
March, 2023
5
October, 2019
2
January, 2018
2
September, 2018
1
August, 2020
1
August, 2022
Available data
1765
bed bed3+
464
bed bed9
204
tsv
118
bigWig
30
bigBed bed9
Organism
2526
Homo sapiens
Biosample type
2528
tissue
2406
primary cell
2317
cell line
463
in vitro differentiated cells
4
stem cell
Organ
349
brain
306
musculature of body
301
kidney
236
limb
232
intestine
214
heart
181
lung
134
large intestine
114
pancreas
108
stomach
98
extraembryonic component
95
connective tissue
84
adipose tissue
84
blood vessel
84
vasculature
80
small intestine
70
eye
64
ureter
62
adrenal gland
61
epithelium
60
placenta
liver
thymus
42
artery
39
gonad
36
spinal cord
35
embryo
35
esophagus
34
spleen
25
nerve
25
skin of body
22
bone element
21
ovary
20
thyroid gland
18
lymphoid tissue
18
skeleton
testis
15
prostate gland
13
breast
13
uterus
11
mouth
10
tongue
10
urinary bladder
10
vagina
4
bodily fluid
3
blood
3
pituitary gland
2
mammary gland
2
penis
1
vein
Project
2523
AMP
5
ITG
Genome assembly (visualization)
2341
hg19
704
GRCh38
2
hg18
organ_slims!
liver
testis
thymus
BIOSAMPLE
TYPE
2528 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
gene expression
eQTL
histone modifications
Fine-mapped variants
variant allelic effects
binding sites
differential activity
variant to gene
pQTL
sQTL
caQTL
other
tissue
heart
37
20
21
5
3
1
2
1
stomach
40
21
19
3
1
1
1
kidney
29
14
16
10
7
1
2
1
1
brain
29
16
18
2
1
2
3
1
1
lung
33
17
16
1
1
muscle of arm
33
16
16
1
1
small intestine
29
17
15
1
1
adrenal gland
28
17
14
1
1
1
placenta
26
15
14
1
1
2
1
muscle of leg
27
14
15
2
large intestine
27
14
13
1
1
muscle of back
28
13
13
left lung
26
13
13
right lung
22
11
11
1
islet of Langerhans
1
3
6
11
13
1
2
1
2
2
2
right kidney
20
10
10
1
1
renal cortex interstitium
20
9
9
1
1
renal pelvis
19
9
9
2
1
retina
6
3
3
23
1
1
1
1
1
left kidney
18
9
9
heart left ventricle
11
7
8
3
1
1
1
2
spleen
15
8
6
2
1
1
1
adipose tissue
7
8
6
2
3
4
1
1
spinal cord
14
8
7
1
1
tibial nerve
6
3
4
3
2
2
3
2
body of pancreas
8
5
4
2
1
3
1
sigmoid colon
10
7
5
1
caudate nucleus
5
3
4
2
1
2
1
3
1
pancreas
5
5
3
5
1
1
1
1
coronary artery
3
3
3
3
1
2
3
2
1
ovary
8
6
4
1
1
1
subcutaneous adipose tissue
2
1
2
5
6
3
1
1
pigmented layer of retina
20
psoas muscle
7
8
4
1
heart right ventricle
6
5
5
1
1
1
right atrium auricular region
3
2
2
3
2
2
3
2
thyroid gland
8
5
4
1
1
tibial artery
3
2
3
3
1
2
3
2
transverse colon
8
5
4
1
1
gastrocnemius medialis
8
5
4
1
omental fat pad
5
2
2
2
2
2
3
substantia nigra
5
2
3
1
3
1
3
muscle of trunk
8
5
4
ascending aorta
4
2
3
1
1
1
3
1
cerebellum
3
2
2
1
2
2
1
3
chorionic villus
8
4
4
frontal cortex
2
2
2
2
2
2
3
1
layer of hippocampus
6
3
4
1
1
1
skeletal muscle tissue
6
3
3
1
2
1
upper lobe of left lung
7
3
3
1
1
1
endocrine pancreas
7
4
4
putamen
2
1
1
2
1
3
1
3
1
Peyer's patch
7
3
3
1
prostate gland
4
2
2
1
1
2
2
temporal lobe
5
2
5
1
1
aorta
4
4
4
1
Ammon's horn
2
2
1
2
1
1
3
left cardiac atrium
2
1
6
1
1
1
left renal cortex interstitium
6
2
2
1
1
left renal pelvis
6
2
2
1
1
right renal pelvis
6
2
2
1
1
breast epithelium
5
3
2
1
esophagus muscularis mucosa
5
2
2
1
1
esophagus squamous epithelium
6
2
2
1
right renal cortex interstitium
5
2
2
1
1
thoracic aorta
4
2
3
1
1
trophoblast
4
3
2
1
1
angular gyrus
4
2
4
chorion membrane
3
3
3
1
colonic mucosa
4
2
3
1
esophagus
4
3
2
1
lower leg skin
6
2
2
vagina
4
2
2
1
1
cingulate gyrus
4
2
3
duodenal mucosa
4
2
3
eye
4
2
2
1
mucosa of rectum
4
2
3
parathyroid adenoma
5
2
2
stomach smooth muscle
4
2
3
tongue
4
2
2
1
uterus
3
2
1
1
1
1
globus pallidus
2
1
1
2
1
1
limb
3
2
2
1
midbrain
1
1
1
2
1
1
1
muscle layer of colon
4
2
2
muscle layer of duodenum
4
2
2
occipital lobe
1
1
1
2
1
1
1
right cardiac atrium
2
2
3
1
urinary bladder
3
2
2
1
amygdala
1
2
1
3
gastroesophageal sphincter
5
1
1
hypothalamus
1
2
1
3
nucleus accumbens
1
2
1
3
superior temporal gyrus
1
1
1
2
1
1
Brodmann (1909) area 46
2
2
2
anterior cingulate cortex
1
2
3
cerebellum (Hemisphere)
1
1
3
1
medulla oblongata
1
1
1
2
1
middle frontal gyrus
2
1
1
1
1
pons
1
1
1
2
1
skin of body
1
1
1
3
subcutaneous abdominal adipose tissue
5
1
umbilical cord
2
1
1
1
1
C1 segment of cervical spinal cord
1
1
3
cartilage tissue
2
1
2
cerebellar cortex
2
1
1
1
gastrocnemius medialis(Muscle - Skeletal)
1
1
3
germinal matrix
2
1
2
left ventricle myocardium
1
1
3
amnion
2
1
1
bone tissue
4
cortex of kidney
1
1
1
1
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
1
3
embryonic facial prominence
1
1
1
1
femur
2
1
1
inferior parietal cortex
1
1
1
1
mucosa of stomach
2
1
1
rectum smooth muscle tissue
1
1
2
visceral abdominal adipose tissue
2
1
1
arm bone
1
1
1
dorsolateral prefrontal cortex
1
1
1
germinal center
1
1
1
leg bone
1
1
1
prefrontal cortex
1
1
1
suprapubic skin
3
hindlimb muscle
1
1
muscle of leg
2
blood
2
breast carcinoma
1
1
chorion
2
endometrium cancer
1
1
fallopian tube
1
1
first pancreatic bud
1
1
forelimb muscle
1
1
kidney epithelium
1
1
mammary gland
1
1
middle frontal area 46
2
minor salivary gland
1
1
pancreatic ductal cell
2
pancreatic stellate cell
2
pituitary gland
1
1
placental basal plate
2
respiratory system smooth muscle
1
1
skeletal muscle
1
1
skin of forearm
1
1
skin of prepuce of penis
1
1
tissue
2
left kidney
1
omental fat pad
1
Brodmann (1909) area 9
1
Crypt of Lieberkuhn
1
Pancreatic islets
1
Schwann cell
1
abdominal aorta artery
1
anterior parahippocampal gyrus
1
aorta wall
1
aortic valve
1
arcuate nucleus of hypothalamus
1
bed nucleus of stria terminalis
1
beige adipocyte
1
bladder
1
bladder (urinary bladder)
1
breast
1
breast - mammary tissue
1
caput epididymis
1
cardiac ventricle
1
cardiogenic mesoderm
1
cerebellar hemisphere
1
cerebrospinal fluid
1
cervix - ectocervix
1
cervix - endocervix
1
circle of Willis
1
claustrum of brain
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
corneal epithelium
1
cortex
1
crypt of Lieberkuhn
1
dentate nucleus
1
diencephalon
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
dorsal lateral geniculate nucleus
1
dura mater
1
endometrium
1
endothelial cell
1
entorhinal cortex
1
epididymis
1
esophagus - gastroesophageal junction
1
esophagus - mucosa
1
esophagus - muscularis
1
esophagus mucosa
1
fetal heart
1
frontal pole
1
gastric (mucosa of stomach)
1
glomerular epithelium
1
gyrus rectus
1
hindlimb muscle
1
intestinal epithelium
1
kidney - cortex
1
kidney - medulla
1
left leg bone
1
locus ceruleus
1
medial dorsal nucleus of thalamus
1
medulloblastoma
1
metanephros
1
mid-frontal lobe
1
mitral valve
1
morula
1
myelencephalon
1
nephron tubule
1
nucleus of ventral thalamus
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic acinar cell
1
pancreatic adenocarcinoma
1
pancreatic carcinoma
1
paraventricular nucleus of hypothalamus
1
parietal lobe
1
pineal body
1
piriform cortex
1
pituitary
1
pontine tegmentum
1
precentral gyrus
1
precuneus cortex
1
prostate
1
proximal epiphysis
1
proximal epiphysis of femur
1
proximal epiphysis of humerus
1
proximal epiphysis of tibia
1
pulmonary valve
1
pulvinar nucleus
1
raphe nuclei
1
rectal smooth muscle tissue
1
red nucleus
1
renal connecting tubule
1
renal cortex tubule
1
renal glomerulus
1
right arm bone
1
septal nuclear complex
1
skin - not sun exposed (suprapubic)
1
skin - sun exposed (lower leg)
1
small intestine - terminal Ileum
1
smooth muscle tissue
1
subiculum
1
superior parietal cortex
1
supramarginal gyrus
1
synovial joint
1
temporal pole
1
thalamic complex
1
thyroid
1
tissue-resident macrophage
1
tricuspid valve
1
type B pancreatic cell
1
white adipose tissue
1
white matter
1
whole blood
1
See all biosamples
Download