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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1553
candidate regulatory elements
1264
target gene predictions
969
histone modifications
828
accessible chromatin
810
binding sites
630
gene expression
149
eQTL
134
differential activity
121
variant allelic effects
71
chromatin state
60
Fine-mapped variants
13
caQTL
5
hQTL
3
meQTL
3
other
3
pQTL
3
sQTL
2
variant to gene
1
representative DNase hypersensitivity sites
Date released
2501
February, 2021
1555
September, 2022
353
February, 2024
348
May, 2021
315
November, 2021
286
September, 2023
279
June, 2020
138
May, 2020
120
August, 2021
110
March, 2020
101
October, 2022
100
January, 2022
72
January, 2020
56
February, 2020
49
May, 2022
44
November, 2022
36
January, 2021
32
August, 2017
31
February, 2023
29
March, 2024
23
March, 2023
19
April, 2020
9
November, 2019
3
November, 2020
3
October, 2019
3
September, 2018
2
August, 2018
1
August, 2020
1
August, 2022
1
January, 2018
1
July, 2020
Available data
5589
bed bed3+
bed bed9
805
tsv
475
bigWig
108
txt
34
bed bed9+
34
bigBed bed9
21
csv
2
bigBed narrowPeak
1
bam
Organism
6574
Homo sapiens
Biosample type
2178
primary cell
2136
cell line
1875
tissue
427
in vitro differentiated cells
4
stem cell
Organ
899
epithelium
575
kidney
417
connective tissue
400
brain
304
musculature of body
pancreas
241
lung
234
intestine
234
vasculature
209
heart
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
142
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
75
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
testis
21
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
5955
AMP
315
ENCODE
281
KPMP
40
T1D
19
LungMap
7
community
5
ITG
Genome assembly (visualization)
5735
hg19
931
GRCh38
4
hg18
organ_slims!
pancreas
limb
files.file_type!
bed bed9
BIOSAMPLE
TYPE
6622 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
chromatin state
Fine-mapped variants
caQTL
hQTL
meQTL
other
pQTL
sQTL
variant to gene
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
1
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
9
1
2
2
B cell
14
10
6
2
+ See 430 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
+ See 759 more…
tissue
heart
37
20
1
5
1
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
10
1
7
1
1
brain
29
16
3
2
1
1
2
1
lung
33
17
1
1
+ See 227 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 120 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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