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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1577
candidate regulatory elements
990
target gene predictions
860
histone modifications
801
binding sites
605
gene expression
484
accessible chromatin
134
differential activity
119
variant allelic effects
71
chromatin state
33
eQTL
6
caQTL
5
hQTL
3
meQTL
3
other
3
pQTL
3
sQTL
2
variant to gene
1
representative DNase hypersensitivity sites
Date released
2501
February, 2021
1570
September, 2022
286
September, 2023
280
June, 2020
255
May, 2021
146
February, 2024
130
May, 2020
99
October, 2022
79
August, 2021
44
March, 2020
44
November, 2022
43
May, 2022
36
January, 2021
32
August, 2017
30
February, 2020
30
March, 2024
25
February, 2023
23
March, 2023
19
April, 2020
17
January, 2020
2
August, 2018
1
August, 2020
1
August, 2022
1
January, 2018
1
January, 2022
1
July, 2020
1
November, 2019
1
November, 2020
1
October, 2019
Available data
4863
bed bed3+
703
tsv
140
bigWig
108
txt
34
bed bed9+
21
csv
7
bigBed bed9
5
bed bed9
2
bigBed narrowPeak
1
bam
Organism
5653
Homo sapiens
Biosample type
1949
cell line
1702
tissue
1642
primary cell
401
in vitro differentiated cells
4
stem cell
Organ
715
epithelium
547
kidney
336
connective tissue
314
brain
279
musculature of body
231
lung
pancreas
210
intestine
179
vasculature
166
limb
165
bodily fluid
heart
157
skin of body
156
blood
135
embryo
131
large intestine
130
blood vessel
109
extraembryonic component
96
liver
93
eye
86
stomach
67
mammary gland
66
adipose tissue
66
bone element
64
prostate gland
60
small intestine
54
lymph node
54
penis
54
placenta
48
adrenal gland
48
ureter
47
artery
37
gonad
37
thymus
31
esophagus
30
spinal cord
26
spleen
25
uterus
20
testis
18
lymphoid tissue
18
vein
16
lymphatic vessel
16
ovary
16
thyroid gland
14
mouth
14
nerve
12
bronchus
12
pituitary gland
11
bone marrow
10
breast
8
tongue
8
urinary bladder
7
skeleton
7
vagina
5
trachea
3
nose
1
pericardium
Project
5351
AMP
281
KPMP
37
T1D
19
LungMap
7
community
5
ITG
Genome assembly (visualization)
6549
hg19
GRCh38
4
hg18
organ_slims!
pancreas
heart
assembly!
GRCh38
BIOSAMPLE
TYPE
5700 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
differential activity
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
meQTL
other
pQTL
sQTL
variant to gene
representative DNase hypersensitivity sites
cell line
A549
21
19
1
2
1
MCF-7
9
6
2
3
1
breast cancer cell
11
9
K562
7
7
1
2
1
1
H1-hESC
1
2
1
2
8
1
+ See 750 more…
tissue
stomach
40
21
1
1
3
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
1
1
lung
33
17
1
muscle of arm
33
16
1
+ See 218 more…
primary cell
CD8-positive, alpha-beta T cell
7
4
30
3
3
1
common myeloid progenitor, CD34-positive
27
14
monocyte
2
2
1
15
5
1
2
1
1
B cell
14
10
2
3
CD14-positive monocyte
8
19
+ See 362 more…
in vitro differentiated cells
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
4
4
neural progenitor cell
5
5
2
7
embryonic stem cell
1
1
1
6
5
cardiomyocytes
11
+ See 118 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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