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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
457
accessible chromatin
360
target gene predictions
253
gene expression
187
chromatin state
151
candidate regulatory elements
118
histone modifications
96
differential activity
74
variant allelic effects
46
eQTL
27
binding sites
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
457
September, 2022
February, 2021
328
November, 2021
256
May, 2021
152
February, 2024
141
September, 2023
80
May, 2020
56
January, 2021
55
March, 2023
47
June, 2020
40
May, 2022
37
January, 2022
29
October, 2022
22
August, 2021
19
April, 2020
16
January, 2020
9
August, 2018
9
February, 2020
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
2
May, 2024
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1210
bed bed3+
386
bigWig
317
tsv
154
bed bed9
27
bed bed9+
13
bigBed narrowPeak
13
txt
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1747
Homo sapiens
Biosample type
1792
primary cell
1750
tissue
1014
cell line
280
in vitro differentiated cells
4
stem cell
Organ
655
epithelium
227
connective tissue
kidney
141
vasculature
119
pancreas
94
blood vessel
72
skin of body
56
liver
41
musculature of body
34
mammary gland
32
extraembryonic component
30
brain
29
lung
25
heart
22
intestine
22
penis
21
artery
18
eye
17
embryo
15
lymphatic vessel
15
vein
11
adrenal gland
11
bronchus
11
stomach
9
esophagus
8
bone element
8
bone marrow
8
prostate gland
placenta
6
large intestine
4
gonad
4
small intestine
3
mouth
3
spinal cord
3
thyroid gland
3
uterus
2
ovary
1
adipose tissue
1
blood
1
bodily fluid
1
limb
1
pericardium
1
testis
1
thymus
1
trachea
Project
1243
AMP
328
ENCODE
141
KPMP
59
T1D
19
LungMap
2
community
Genome assembly (visualization)
1408
hg19
684
GRCh38
organ_slims!
placenta
kidney
month_released!
February, 2021
BIOSAMPLE
TYPE
1792 results
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Clear Filters
accessible chromatin
target gene predictions
gene expression
chromatin state
candidate regulatory elements
histone modifications
differential activity
variant allelic effects
eQTL
binding sites
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
15
84
4
2
1
1
CD8-positive, alpha-beta T cell
4
5
3
1
30
common myeloid progenitor, CD34-positive
14
13
13
B cell
6
10
2
8
9
endothelial cell
15
7
5
2
1
2
fibroblast
16
4
6
2
1
hepatocyte
8
3
10
1
1
3
2
macrophage
12
3
2
3
7
1
CD14-positive monocyte
19
4
4
CD4-positive, alpha-beta memory T cell
9
9
9
regulatory T cell
5
4
7
3
3
2
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
CD8-positive, alpha-beta memory T cell
7
7
7
T-helper 1 cell
3
3
7
3
3
1
smooth muscle cell
9
6
1
2
1
1
T-helper 17 cell
2
3
7
3
3
1
mononuclear cell
6
6
6
pancreatic beta cell
8
2
3
3
1
endothelial cell of hepatic sinusoid
6
4
6
natural killer cell
3
5
1
3
3
1
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
4
3
3
1
pancreatic ductal cell
6
3
3
3
1
T-helper 2 cell
2
3
3
3
3
1
astrocyte
8
4
1
1
1
endothelial cell of umbilical vein
2
4
5
2
1
1
pancreatic alpha cell
7
2
3
3
trophoblast cell
1
5
4
4
fibroblast of lung
4
4
3
2
keratinocyte
2
5
3
2
1
neutrophil
3
2
2
2
2
1
1
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
foreskin keratinocyte
4
4
4
mammary gland epithelial cell
1
4
3
3
1
skeletal muscle myoblast
2
2
1
3
2
1
1
skeletal muscle satellite cell
5
2
2
2
1
erythroblast
5
2
2
2
fibroblast of dermis
4
3
3
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
1
2
1
1
1
1
osteoblast
4
2
1
1
1
1
memory B cell
4
2
3
naive T cell
3
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
3
1
neurosphere
3
3
3
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
glutamatergic neuron
6
2
pancreatic stellate cell
2
1
2
3
CD4-positive, alpha-beta T cell
1
3
3
bronchial epithelial cell
1
2
2
2
epithelial cell of prostate
3
2
2
foreskin fibroblast
1
2
1
1
2
hepatic stellate cell
3
1
1
1
1
luminal epithelial cell of mammary gland
2
3
1
1
mature neutrophil
7
retinal pigment epithelial cell
3
1
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
alternatively activated macrophage
1
1
4
choroid plexus epithelial cell
1
1
1
1
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis blood vessel endothelial cell
2
2
2
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
fibroblast of breast
2
2
2
mesenchymal stem cell
2
1
1
1
1
myoepithelial cell of mammary gland
2
2
2
naive B cell
3
2
1
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
1
2
1
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
Classical Dendritic Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Fibroblast
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Regulatory T Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
astrocyte of the cerebellum
1
1
1
1
1
astrocyte of the hippocampus
1
1
1
1
1
basal cell
2
1
2
cardiac muscle cell
1
1
2
1
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
epithelial cell of esophagus
1
1
1
2
fibroblast of mammary gland
1
1
1
1
1
fibroblast of pulmonary artery
1
1
1
1
1
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
pancreatic endothelial cell
1
1
3
skeletal muscle cell
1
1
1
1
1
smooth muscle cell of the brain vasculature
1
1
1
1
1
CD1c-positive myeloid dendritic cell
1
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
1
adipocyte
2
1
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
1
1
1
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
1
1
fibroblast of the aortic adventitia
1
1
1
1
gamma-delta T cell
2
2
iris pigment epithelial cell
1
1
1
1
mammary epithelial cell
1
1
1
1
mast cell
1
1
1
1
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
myofibroblast cell
1
3
non-pigmented ciliary epithelial cell
1
1
1
1
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
pulmonary artery endothelial cell
1
1
1
1
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
Cycling Mononuclear Phagocyte
3
Mast Cell
3
Schwann cell
1
2
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
aortic endothelial cell
2
1
astrocyte of the spinal cord
1
1
1
blood cell
3
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
fibroblast of gingiva
1
1
1
fibroblast of the conjunctiva
1
1
1
foreskin melanocyte
1
1
1
glial cell
2
1
goblet cell
1
2
leukocyte
2
1
lung microvascular endothelial cell
1
1
1
mammary stem cell
1
1
1
mesangial cell
2
1
microglial cell
1
1
1
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
plasma cell
2
1
plasmacytoid dendritic cell
2
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
stromal cell of bone marrow
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Muller cell
2
T-cell
2
acute myeloid leukemia cell
2
alveolar macrophage
1
1
aortic adventitial fibroblast
1
1
articular chondrocyte
2
basal cell of epidermis
1
1
bone marrow cell
2
brain pericyte
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
colon goblet cell
1
1
conventional dendritic cell
1
1
eccrine cell
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
intestinal tuft cell
1
1
luteal cell
1
1
mature NK T cell
1
1
melanocyte
1
1
myeloid dendritic cell
1
1
myoepithelial cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
paneth cell
1
1
regular atrial cardiac myocyte
1
1
renal epithelial cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small intestine goblet cell
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Ishikawa
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated pancreatic stellate cell
1
adult endothelial progenitor cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
gastric goblet cell
1
granulosa cell
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
islet of Langerhans
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
microglial cell/astrocyte
1
myotube
1
neoplastic cell
1
neuroendocrine cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic endocrine cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
pericardium fibroblast
1
peripheral blood stem cell
1
peripheral neuron
1
photoreceptor cell
1
preadipocyte
1
primordial germ cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
pulmonary interstitial fibroblast
1
quiescent pancreatic stellate cell
1
retinal bipolar neuron
1
sensory neuron
1
somatic gonadal cell
1
sympathetic neuron
1
tracheal epithelial cell
1
trophoblast giant cell
1
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