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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
451
accessible chromatin
431
gene expression
365
target gene predictions
327
candidate regulatory elements
209
histone modifications
197
chromatin state
152
differential activity
93
binding sites
41
eQTL
25
variant allelic effects
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
454
February, 2021
331
November, 2021
281
September, 2023
256
May, 2021
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
52
June, 2020
42
August, 2021
40
May, 2022
37
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
2
May, 2024
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1487
bed bed3+
556
tsv
384
bigWig
164
bed bed9
108
txt
27
bed bed9+
5
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2269
Homo sapiens
Biosample type
2595
tissue
2314
primary cell
2170
cell line
438
in vitro differentiated cells
4
stem cell
Organ
759
epithelium
309
kidney
270
connective tissue
153
vasculature
114
pancreas
100
blood vessel
99
skin of body
45
mammary gland
41
penis
40
extraembryonic component
38
liver
36
musculature of body
35
brain
33
lung
31
heart
29
artery
23
eye
22
embryo
20
intestine
20
vein
17
lymphatic vessel
15
bronchus
14
bone element
13
bone marrow
10
adrenal gland
10
placenta
9
blood
9
bodily fluid
9
prostate gland
9
stomach
8
esophagus
6
large intestine
5
trachea
uterus
4
gonad
4
mouth
4
small intestine
4
spinal cord
2
ovary
2
thyroid gland
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1623
AMP
331
ENCODE
281
KPMP
58
T1D
19
LungMap
2
community
Genome assembly (visualization)
1681
hg19
674
GRCh38
organ_slims!
skeleton
uterus
month_released!
February, 2024
BIOSAMPLE
TYPE
2314 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
target gene predictions
candidate regulatory elements
histone modifications
chromatin state
differential activity
binding sites
eQTL
variant allelic effects
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
15
2
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
3
5
7
30
1
B cell
6
2
10
13
8
endothelial cell
14
8
7
1
2
2
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
macrophage
12
2
3
7
1
epithelial cell of proximal tubule
1
16
1
2
1
1
1
fibroblast
16
4
1
2
regulatory T cell
5
2
4
5
1
3
1
2
CD8-positive, alpha-beta memory T cell
7
8
7
hepatocyte
3
8
3
1
4
1
1
1
pericyte cell
10
10
1
1
glomerular endothelial cell
2
14
1
2
1
1
natural killer cell
3
2
5
6
1
3
1
T cell
6
4
4
4
2
endothelial cell of umbilical vein
2
4
6
5
2
1
mononuclear cell
6
7
6
1
foreskin keratinocyte
4
11
4
T-helper 1 cell
3
2
3
6
3
1
trophoblast cell
1
5
7
1
4
T-helper 17 cell
2
3
3
5
3
1
osteoblast
5
2
2
2
2
1
3
pancreatic ductal cell
5
3
3
2
3
1
T-helper 2 cell
2
2
3
5
3
1
astrocyte
8
4
2
1
1
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
keratinocyte
2
5
3
2
3
1
pancreatic alpha cell
6
3
3
3
1
pancreatic beta cell
7
3
3
3
skeletal muscle myoblast
2
1
2
4
1
3
2
1
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
smooth muscle cell
8
6
1
pancreatic acinar cell
5
3
3
3
pancreatic delta cell
4
3
4
3
mammary epithelial cell
1
1
3
3
1
4
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
2
1
1
1
1
neurosphere
3
7
3
bronchial epithelial cell
1
2
4
1
2
2
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
mammary gland epithelial cell
1
4
3
3
1
erythroblast
5
2
2
2
glomerular visceral epithelial cell
2
5
1
2
1
skeletal muscle satellite cell
4
1
2
2
2
dermis blood vessel endothelial cell
2
6
2
kidney tubule cell
2
1
2
3
2
retinal pigment epithelial cell
3
1
2
1
1
2
epithelial cell of prostate
3
4
2
hepatic stellate cell
3
1
1
1
1
1
1
mature neutrophil
1
7
1
naive T cell
3
3
3
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
fibroblast of villous mesenchyme
1
1
2
1
1
2
glutamatergic neuron
6
2
kidney glomerular epithelial cell
2
1
1
2
1
1
memory B cell
4
2
2
myoepithelial cell of mammary gland
2
4
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
2
1
pancreatic stellate cell
2
2
1
3
renal cortical epithelial cell
2
1
1
2
1
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
choroid plexus epithelial cell
1
1
2
1
1
1
kidney epithelial cell
1
1
1
2
1
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
3
1
1
mesangial cell
2
5
pulmonary artery endothelial cell
1
1
2
1
1
1
T-cell
2
4
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
cardiac muscle cell
1
1
2
1
1
colon epithelial cell
3
3
dermis lymphatic vessel endothelial cell
2
2
2
foreskin melanocyte
1
4
1
gamma-delta T cell
2
4
peripheral blood mononuclear cell
4
1
1
plasma cell
2
1
1
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
type II pneumocyte
4
2
cardiac fibroblast
3
2
Adaptive / Maladaptive / Repairing Fibroblast
3
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
B Cell
3
2
CD14-positive, CD16-negative classical monocyte
5
Classical Dendritic Cell
3
2
Connecting Tubule Cell
3
2
Connecting Tubule Intercalated Cell Type A
3
2
Connecting Tubule Principal Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Cycling T Cell
3
2
Cytotoxic T Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Degenerative Vascular Smooth Muscle Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Fibroblast
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
M2 Macrophage
3
2
Medullary Thick Ascending Limb Cell
3
2
Mesangial Cell
3
2
Monocyte
3
2
Monocyte-derived Cell
3
2
Myofibroblast
3
2
Natural Killer T Cell
3
2
Natural Killer T Cell Type 1
3
2
Natural Killer T Cell Type 2
3
2
Non-Classical Monocyte
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Plasma Cell
3
2
Plasmacytoid Dendritic Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Regulatory T Cell
3
2
Renin-positive Juxtaglomerular Granular Cell
3
2
T Cell
3
2
T follicular helper cell
2
2
1
Transitional Principal-Intercalated Cell
3
2
Vascular Smooth Muscle Cell / Pericyte
3
2
brain microvascular endothelial cell
1
1
2
1
cortical cell of adrenal gland
3
2
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
1
3
1
mast cell
1
1
1
1
1
naive B cell
3
2
non-pigmented ciliary epithelial cell
1
1
2
1
tracheal epithelial cell
1
2
2
CD4-positive helper T cell
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adult endothelial progenitor cell
3
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
central memory CD8-positive, alpha-beta T cell
2
2
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
effector memory CD8-positive, alpha-beta T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
epithelial cell of esophagus
1
2
1
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
kidney connecting tubule epithelial cell
4
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesenchymal stem cell
1
1
1
1
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic endothelial cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
pancreatic polypeptide-secreting cell
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I muscle cell
2
1
1
type I pneumocyte
3
1
type II muscle cell
2
1
1
Cycling Mononuclear Phagocyte
3
Mast Cell
3
S-shaped body
3
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
basal cell
2
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
enterocyte
3
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary stem cell
1
1
1
meso-epithelial cell
1
1
1
mesothelial cell
2
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
preadipocyte
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
skeletal muscle fiber
3
smooth muscle cell of the coronary artery
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
alveolar macrophage
1
1
articular chondrocyte
2
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
endothelial cell of coronary artery
1
1
endothelial cell of hepatic sinusoid
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
leukocyte
1
1
luteal cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
melanocyte
1
1
myeloid dendritic cell
1
1
myoepithelial cell
1
1
myofibroblast cell
1
1
natural killer cell mediated cytotoxicity
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
paneth cell
1
1
parietal cell
1
1
peptic cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
thyroid follicular cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Schwann cell
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
adipocyte
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
effector memory CD4-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
glial cell
1
goblet cell
1
granulocyte
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic endocrine cell
1
pancreatic epsilon cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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