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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1596
candidate regulatory elements
1310
target gene predictions
964
histone modifications
799
binding sites
672
gene expression
377
accessible chromatin
167
differential activity
166
eQTL
135
variant allelic effects
74
Fine-mapped variants
74
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2508
February, 2021
1606
September, 2022
366
May, 2021
339
February, 2024
286
September, 2023
281
June, 2020
128
March, 2020
108
August, 2021
106
November, 2021
99
January, 2022
99
May, 2020
97
October, 2022
70
March, 2023
64
February, 2020
42
May, 2022
34
August, 2017
33
November, 2022
28
January, 2021
28
March, 2024
18
January, 2020
13
February, 2023
9
August, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
November, 2019
1
November, 2020
Available data
5758
bed bed3+
896
tsv
bed bed9
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6367
Homo sapiens
Biosample type
2113
cell line
2026
tissue
1817
primary cell
409
in vitro differentiated cells
4
stem cell
Organ
723
epithelium
540
kidney
379
brain
362
connective tissue
288
musculature of body
232
lung
223
intestine
207
pancreas
204
vasculature
193
bodily fluid
188
heart
186
embryo
184
blood
180
limb
skin of body
155
blood vessel
138
large intestine
119
liver
110
extraembryonic component
91
stomach
78
uterus
76
adipose tissue
70
mammary gland
65
bone element
65
prostate gland
64
eye
63
small intestine
59
artery
55
placenta
54
lymph node
54
penis
53
adrenal gland
48
ureter
41
gonad
37
thymus
36
esophagus
35
spinal cord
27
spleen
22
testis
19
lymphoid tissue
19
nerve
18
ovary
18
thyroid gland
18
vein
16
lymphatic vessel
15
mouth
13
pituitary gland
12
bronchus
11
breast
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
7
skeleton
5
trachea
3
nose
1
pericardium
Project
5938
AMP
281
KPMP
106
ENCODE
32
T1D
9
community
5
ITG
Genome assembly (visualization)
5400
hg19
619
GRCh38
4
hg18
organ_slims!
skin of body
files.file_type!
bed bed9
bigWig
BIOSAMPLE
TYPE
6371 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
differential activity
eQTL
variant allelic effects
Fine-mapped variants
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
8
1
A549
21
19
1
2
1
K562
7
23
1
2
1
1
EndoC_BH1
1
1
1
8
7
3
1
+ See 745 more…
tissue
stomach
40
21
1
1
3
1
heart
37
20
1
1
3
2
2
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
1
2
1
lung
33
17
1
1
+ See 235 more…
primary cell
monocyte
2
86
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
3
1
common myeloid progenitor, CD34-positive
27
14
CD14-positive monocyte
8
19
B cell
14
10
2
+ See 398 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
7
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
3
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 116 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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