Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1375
candidate regulatory elements
1127
target gene predictions
933
histone modifications
756
binding sites
660
accessible chromatin
79
variant allelic effects
34
chromatin state
9
caQTL
6
eQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2165
February, 2021
1393
September, 2022
258
May, 2021
252
June, 2020
226
February, 2024
193
November, 2021
118
May, 2020
88
October, 2022
49
January, 2020
41
August, 2021
40
March, 2020
36
January, 2021
28
August, 2017
26
November, 2022
20
February, 2023
12
April, 2020
12
November, 2019
10
May, 2022
5
January, 2022
5
September, 2023
4
October, 2019
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
4991
bed bed3+
725
bed bed9
560
tsv
353
bigWig
35
bigBed bed9
34
bed bed9+
30
txt
18
csv
2
bigBed narrowPeak
1
bam
Organism
4945
Homo sapiens
Biosample type
2030
cell line
1555
tissue
1076
primary cell
324
in vitro differentiated cells
4
stem cell
Organ
epithelium
330
connective tissue
309
brain
309
kidney
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
175
limb
173
heart
skin of body
163
vasculature
159
pancreas
137
large intestine
123
blood vessel
112
extraembryonic component
101
liver
98
eye
93
stomach
76
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
46
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
4745
AMP
193
ENCODE
40
T1D
12
LungMap
1
ITG
Genome assembly (visualization)
4984
hg19
607
GRCh38
1
hg18
organ_slims!
skin of body
epithelium
musculature of body
BIOSAMPLE
TYPE
4991 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
accessible chromatin
variant allelic effects
chromatin state
caQTL
eQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
HeLa-S3
5
55
1
A549
21
19
1
2
1
H1-hESC
1
39
1
2
1
K562
7
23
1
2
1
1
MCF-7
9
6
2
3
1
+ See 729 more…
tissue
heart
37
20
1
1
5
2
stomach
40
21
1
3
kidney
29
14
2
1
10
1
1
brain
29
16
3
1
2
1
lung
33
17
+ See 176 more…
primary cell
monocyte
2
86
1
18
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
CD14-positive monocyte
8
19
+ See 217 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
1
4
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 95 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download