Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
69
candidate regulatory elements
44
target gene predictions
36
chromatin state
10
accessible chromatin
binding sites
5
histone modifications
eQTL
2
gene expression
Date released
98
September, 2022
41
February, 2021
7
June, 2020
6
November, 2021
5
May, 2021
3
August, 2017
3
February, 2024
2
March, 2024
1
March, 2020
Available data
131
bed bed3+
33
bed bed9
3
bigWig
2
tsv
Organism
166
Homo sapiens
Biosample type
131
tissue
29
cell line
6
primary cell
Organ
903
epithelium
641
kidney
421
brain
408
connective tissue
361
musculature of body
301
lung
280
intestine
257
pancreas
244
heart
239
vasculature
237
limb
202
embryo
183
skin of body
182
blood vessel
170
bodily fluid
166
large intestine
160
blood
142
extraembryonic component
135
liver
118
stomach
102
eye
83
small intestine
81
bone element
78
uterus
75
mammary gland
74
adipose tissue
72
adrenal gland
69
placenta
69
prostate gland
64
artery
64
ureter
57
penis
50
lymph node
48
thymus
44
gonad
42
esophagus
39
spinal cord
32
spleen
24
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
21
testis
20
vein
19
lymphatic vessel
18
mouth
18
skeleton
14
bronchus
12
breast
12
pituitary gland
11
bone marrow
tongue
10
urinary bladder
9
vagina
4
nose
3
trachea
1
pericardium
Project
160
AMP
6
ENCODE
Genome assembly (visualization)
164
hg19
41
GRCh38
organ_slims!
tongue
annotation_type!
eQTL
binding sites
BIOSAMPLE
TYPE
166 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
gene expression
tissue
large intestine
27
14
13
1
1
sigmoid colon
10
7
5
1
transverse colon
8
5
4
1
colonic mucosa
4
2
3
1
mucosa of rectum
4
2
3
+ See 5 more…
cell line
HT-29
2
2
1
1
1
HCT116
2
3
1
SW480
2
1
1
1
1
RKO
1
1
1
colon epithelial cell
1
1
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
See all biosamples
Download