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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
482
accessible chromatin
371
target gene predictions
328
candidate regulatory elements
307
gene expression
210
histone modifications
197
chromatin state
100
binding sites
81
variant allelic effects
45
eQTL
42
differential activity
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
487
September, 2022
456
February, 2021
331
November, 2021
September, 2023
256
May, 2021
152
February, 2024
86
May, 2020
56
January, 2021
55
March, 2023
52
June, 2020
42
August, 2021
40
May, 2022
36
January, 2022
31
October, 2022
23
January, 2020
19
April, 2020
16
February, 2020
9
August, 2018
9
November, 2022
7
October, 2019
6
August, 2017
5
March, 2020
4
February, 2023
3
November, 2020
2
May, 2024
1
July, 2020
1
June, 2021
1
March, 2024
Available data
1592
bed bed3+
409
bigWig
310
tsv
164
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2141
Homo sapiens
Biosample type
2603
tissue
2345
cell line
2186
primary cell
466
in vitro differentiated cells
3
stem cell
Organ
664
epithelium
268
connective tissue
169
kidney
134
vasculature
126
pancreas
100
skin of body
94
blood vessel
63
liver
50
musculature of body
46
mammary gland
41
penis
40
extraembryonic component
35
brain
34
lung
31
heart
24
artery
23
eye
23
intestine
22
embryo
20
vein
16
bronchus
14
bone element
13
bone marrow
12
lymphatic vessel
11
adrenal gland
11
stomach
10
esophagus
10
placenta
10
prostate gland
9
blood
9
bodily fluid
6
large intestine
5
trachea
5
uterus
gonad
4
mouth
4
small intestine
4
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1775
AMP
331
ENCODE
59
T1D
19
LungMap
2
community
Genome assembly (visualization)
1800
hg19
704
GRCh38
organ_slims!
tongue
gonad
month_released!
September, 2023
BIOSAMPLE
TYPE
2186 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
gene expression
histone modifications
chromatin state
binding sites
variant allelic effects
eQTL
differential activity
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
15
86
1
4
2
1
1
common myeloid progenitor, CD34-positive
14
27
13
CD8-positive, alpha-beta T cell
4
5
7
3
30
1
B cell
6
10
14
2
8
endothelial cell
15
7
9
1
2
2
1
2
hepatocyte
8
3
1
13
4
1
1
2
CD4-positive, alpha-beta memory T cell
9
14
9
CD14-positive monocyte
19
8
4
fibroblast
16
4
1
6
2
macrophage
12
3
2
3
7
1
regulatory T cell
5
4
5
7
1
3
1
2
T-helper 1 cell
3
3
6
7
3
1
epithelial cell of proximal tubule
1
1
2
16
1
1
1
CD8-positive, alpha-beta memory T cell
7
8
7
T cell
6
4
4
4
2
2
pericyte cell
10
10
1
1
T-helper 17 cell
2
3
5
7
3
1
glomerular endothelial cell
2
1
2
14
1
1
natural killer cell
3
5
6
2
1
3
1
endothelial cell of umbilical vein
2
4
6
5
2
1
mononuclear cell
6
7
6
1
smooth muscle cell
9
6
1
2
1
1
foreskin keratinocyte
4
11
4
pancreatic ductal cell
6
3
3
2
1
1
3
pancreatic beta cell
8
3
3
1
3
trophoblast cell
1
5
7
1
4
T-helper 2 cell
2
3
5
3
3
1
astrocyte
8
4
2
1
1
1
keratinocyte
2
5
3
2
3
1
1
osteoblast
5
2
2
2
2
1
3
pancreatic alpha cell
7
3
3
1
3
endothelial cell of hepatic sinusoid
6
4
6
fibroblast of lung
4
6
4
2
foreskin fibroblast
1
2
6
2
1
4
pancreatic acinar cell
6
3
3
1
3
pancreatic delta cell
5
4
3
1
3
skeletal muscle myoblast
2
2
4
1
1
3
2
1
CD4-positive, alpha-beta T cell
1
3
8
3
neutrophil
3
4
2
2
2
1
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
1
2
1
1
1
1
mammary epithelial cell
1
1
3
3
1
4
mammary gland epithelial cell
1
4
3
3
1
1
neurosphere
3
7
3
skeletal muscle satellite cell
5
2
2
2
2
bronchial epithelial cell
1
2
4
1
2
2
excitatory neuron
12
fibroblast of cardiac tissue
2
4
3
3
fibroblast of dermis
4
4
3
1
erythroblast
5
2
2
2
glomerular visceral epithelial cell
2
1
2
5
1
dermis blood vessel endothelial cell
2
6
2
kidney tubule cell
2
2
3
1
2
retinal pigment epithelial cell
3
1
2
1
1
2
epithelial cell of prostate
3
4
2
hepatic stellate cell
3
1
1
1
1
1
1
mature neutrophil
1
7
1
memory B cell
4
2
3
naive T cell
3
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
3
1
skeletal muscle fiber
5
2
2
skin fibroblast
2
3
2
2
fibroblast of breast
2
4
2
fibroblast of mammary gland
1
1
2
1
1
2
fibroblast of pulmonary artery
1
1
2
1
1
2
fibroblast of villous mesenchyme
1
1
2
1
1
2
glutamatergic neuron
6
2
kidney glomerular epithelial cell
2
1
2
1
1
1
myoepithelial cell of mammary gland
2
4
2
pancreatic stellate cell
2
1
2
3
renal cortical epithelial cell
2
1
2
1
1
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
1
cardiac muscle cell
1
1
2
1
2
choroid plexus epithelial cell
1
1
2
1
1
1
kidney epithelial cell
1
1
2
1
1
1
kidney interstitial cell
1
6
kidney loop of Henle thin ascending limb epithelial cell
7
luminal epithelial cell of mammary gland
2
3
1
1
mesangial cell
2
5
mesenchymal stem cell
2
1
1
1
1
1
pulmonary artery endothelial cell
1
1
2
1
1
1
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
T-cell
2
4
alternatively activated macrophage
1
1
4
astrocyte of the cerebellum
1
1
2
1
1
astrocyte of the hippocampus
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
epithelial cell of esophagus
1
2
1
2
foreskin melanocyte
1
4
1
gamma-delta T cell
2
4
mast cell
1
1
1
1
1
1
naive B cell
3
2
1
olfactory receptor cell
6
pancreatic polypeptide-secreting cell
2
1
2
1
peripheral blood mononuclear cell
4
1
1
plasma cell
2
1
1
1
1
skeletal muscle cell
1
1
2
1
1
smooth muscle cell of the brain vasculature
1
1
2
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
T follicular helper cell
2
2
1
basal cell
2
1
2
brain microvascular endothelial cell
1
1
2
1
central memory CD8-positive, alpha-beta T cell
2
3
effector memory CD8-positive, alpha-beta T cell
2
3
fibroblast of peridontal ligament
1
1
2
1
fibroblast of the aortic adventitia
1
2
1
1
gabaergic neuron
3
2
inflammatory macrophage
1
1
3
inhibitory neuron
5
iris pigment epithelial cell
1
1
2
1
kidney capillary endothelial cell
1
1
1
1
1
kidney cortex collecting duct principal cell
5
kidney distal convoluted tubule epithelial cell
1
4
kidney loop of Henle thick ascending limb epithelial cell
5
lung microvascular endothelial cell
1
3
1
myofibroblast cell
1
1
3
non-pigmented ciliary epithelial cell
1
1
2
1
pancreatic endothelial cell
1
1
3
tracheal epithelial cell
1
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
adult endothelial progenitor cell
1
3
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
astrocyte of the spinal cord
1
2
1
blood vessel smooth muscle cell
2
2
cardiac fibroblast
3
1
effector CD4-positive, alpha-beta T cell
2
2
effector T cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of gingiva
1
2
1
fibroblast of the conjunctiva
1
2
1
kidney connecting tubule epithelial cell
4
leukocyte
2
2
mature natural killer cell
2
2
megakaryocyte
2
2
memory T cell
2
2
memory regulatory T cell
2
2
mesothelial cell
2
1
1
nephron progenitor
4
pancreatic MUC5B+ductal cell
1
3
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pancreatic macrophage cell
1
3
pancreatic mast cell
1
3
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
stromal cell of bone marrow
1
2
1
type I pneumocyte
3
1
vascular associated smooth muscle cell
2
2
Ishikawa
1
1
1
S-shaped body
3
Schwann cell
1
2
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
amnion mesenchymal stem cell
1
1
1
amniotic stem cell
1
1
1
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
erythroid cell
1
1
1
glial cell
2
1
goblet cell
1
2
kidney cell
3
kidney collecting duct intercalated cell
3
kidney cortex collecting duct intercalated cell
3
kidney inner medulla collecting duct principal cell
3
kidney loop of Henle descending limb epithelial cell
3
kidney resident macrophage
3
mammary stem cell
1
1
1
meso-epithelial cell
1
1
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive B cel
2
1
naive regulatory T cell
2
1
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic quiescent stellate cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
regular cardiac myocyte
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
1
Kupffer cell
2
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Th2 cell
1
1
alveolar macrophage
1
1
articular chondrocyte
2
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
cholangiocyte
1
1
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector memory CD4-positive, alpha-beta T cell
1
1
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
kidney inner medulla collecting duct intercalated cell
2
leukemic stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
melanocyte
1
1
myeloid dendritic cell
1
1
myoepithelial cell
1
1
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
renal principal cell
1
1
renal proximal tubule cell
1
1
renal vesicle
2
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
ureteric bud
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-1 B cell
1
B-1a B cell
1
B-2 B cell
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
activated pancreatic stellate cell
1
acute myeloid leukemia
1
alpha-beta T cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cells - cultured fibroblasts
1
central memory CD4-positive, alpha-beta T cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
cytotoxic T cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
dendritic cell
1
effector CD8-positive, alpha-beta T cell
1
embryonic stem cell
1
endothelial cell of artery
1
enteroendocrine cell
1
epithelial cell of distal tubule
1
erythrocyte
1
erythroid lineage cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney granular cell
1
kidney inner medulla collecting duct epithelial cell
1
kidney interstitial fibroblast
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature B cell
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid leukocyte
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic epsilon cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule
1
proximal tubule cells with injury markers
1
quiescent pancreatic stellate cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal connecting tubule
1
renal intercalated cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
urinary bladder cancer cell
1
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