Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1662
candidate regulatory elements
1299
target gene predictions
974
histone modifications
900
accessible chromatin
812
binding sites
124
variant allelic effects
40
chromatin state
10
eQTL
6
caQTL
3
hQTL
2
meQTL
2
other
2
pQTL
2
variant to gene
1
sQTL
Date released
2399
February, 2021
1670
September, 2022
331
November, 2021
286
June, 2020
283
May, 2021
242
February, 2024
135
May, 2020
98
October, 2022
66
January, 2020
56
January, 2021
51
August, 2021
45
March, 2020
41
November, 2022
34
August, 2017
26
February, 2023
19
April, 2020
15
May, 2022
13
November, 2019
9
October, 2019
5
January, 2022
5
September, 2023
3
September, 2018
2
November, 2020
1
April, 2019
1
August, 2020
1
August, 2022
1
June, 2021
Available data
5839
bed bed3+
865
bed bed9
536
bigWig
96
tsv
40
bigBed bed9
34
bed bed9+
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
5793
Homo sapiens
Biosample type
2062
cell line
1840
tissue
1584
primary cell
347
in vitro differentiated cells
4
stem cell
Organ
546
epithelium
329
connective tissue
309
brain
309
kidney
281
musculature of body
239
lung
228
intestine
190
bodily fluid
181
blood
178
embryo
175
limb
171
heart
165
skin of body
160
vasculature
159
pancreas
137
large intestine
120
blood vessel
112
extraembryonic component
100
liver
98
eye
93
stomach
uterus
73
mammary gland
70
bone element
64
small intestine
63
prostate gland
57
adrenal gland
56
placenta
54
lymph node
54
penis
51
ureter
49
adipose tissue
44
artery
38
thymus
37
gonad
33
esophagus
29
spinal cord
26
spleen
19
testis
18
lymphoid tissue
17
ovary
17
thyroid gland
17
vein
15
skeleton
14
bronchus
14
lymphatic vessel
14
nerve
13
mouth
11
bone marrow
11
pituitary gland
9
breast
7
tongue
7
urinary bladder
6
vagina
5
trachea
3
nose
Project
5430
AMP
331
ENCODE
58
T1D
19
LungMap
1
ITG
Genome assembly (visualization)
5839
hg19
747
GRCh38
1
hg18
organ_slims!
uterus
BIOSAMPLE
TYPE
5839 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
variant allelic effects
chromatin state
eQTL
caQTL
hQTL
meQTL
other
pQTL
variant to gene
sQTL
cell line
A549
21
19
1
1
2
H1-hESC
1
39
1
1
2
K562
7
23
1
1
2
1
MCF-7
9
6
2
1
3
breast cancer cell
11
9
+ See 758 more…
tissue
heart
37
20
1
5
1
2
stomach
40
21
1
3
kidney
29
14
2
10
1
1
1
brain
29
16
3
2
1
1
muscle of arm
33
16
1
1
+ See 214 more…
primary cell
monocyte
2
86
18
1
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
common myeloid progenitor, CD34-positive
27
14
B cell
14
10
6
endothelial cell
7
1
15
2
2
1
1
+ See 327 more…
in vitro differentiated cells
neural progenitor cell
5
5
14
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
adipocyte
4
6
1
4
1
4
mesenchymal stem cell
3
3
1
1
1
T-cell acute lymphoblastic leukemia
5
3
+ See 103 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download