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Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
484
accessible chromatin
372
target gene predictions
328
candidate regulatory elements
210
histone modifications
100
binding sites
81
variant allelic effects
44
eQTL
41
gene expression
33
chromatin state
11
caQTL
5
hQTL
3
meQTL
3
sQTL
1
other
Date released
334
February, 2021
333
November, 2021
327
September, 2022
188
May, 2021
117
February, 2024
86
May, 2020
56
January, 2021
53
June, 2020
40
May, 2022
37
January, 2022
31
October, 2022
21
January, 2020
19
April, 2020
17
August, 2021
16
February, 2020
9
August, 2018
9
November, 2022
6
August, 2017
5
March, 2020
5
October, 2019
4
February, 2023
2
November, 2020
1
June, 2021
Available data
1595
bed bed3+
tsv
410
bigWig
bed bed9
108
txt
27
bed bed9+
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1671
Homo sapiens
Biosample type
2151
cell line
1947
tissue
1716
primary cell
355
in vitro differentiated cells
4
stem cell
Organ
470
epithelium
220
connective tissue
108
vasculature
83
skin of body
79
pancreas
75
blood vessel
62
kidney
47
musculature of body
43
liver
39
mammary gland
35
penis
32
extraembryonic component
31
brain
30
lung
28
heart
23
intestine
22
artery
20
eye
18
embryo
16
vein
14
bronchus
13
bone element
12
bone marrow
11
adrenal gland
11
stomach
10
lymphatic vessel
9
blood
9
bodily fluid
9
esophagus
9
placenta
8
prostate gland
6
large intestine
5
trachea
5
uterus
4
gonad
4
small intestine
3
mouth
3
spinal cord
3
thyroid gland
2
ovary
1
adipose tissue
1
limb
1
pericardium
1
testis
1
thymus
Project
1305
AMP
333
ENCODE
59
T1D
19
LungMap
Genome assembly (visualization)
1639
hg19
534
GRCh38
organ_slims!
vagina
files.file_type!
tsv
bed bed9
BIOSAMPLE
TYPE
1716 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
binding sites
variant allelic effects
eQTL
gene expression
chromatin state
caQTL
hQTL
meQTL
sQTL
other
primary cell
monocyte
18
2
86
1
4
2
1
1
CD8-positive, alpha-beta T cell
4
5
7
30
1
common myeloid progenitor, CD34-positive
14
27
endothelial cell
15
7
1
2
2
1
1
2
B cell
6
10
14
fibroblast
16
4
1
6
2
CD14-positive monocyte
19
8
macrophage
12
3
3
7
1
CD4-positive, alpha-beta memory T cell
9
14
hepatocyte
8
3
1
4
1
2
4
pericyte cell
10
10
1
smooth muscle cell
9
6
2
1
1
1
T cell
6
4
4
2
2
regulatory T cell
5
4
5
1
1
2
endothelial cell of umbilical vein
2
4
6
2
1
1
natural killer cell
3
5
6
1
1
CD4-positive, alpha-beta T cell
1
3
8
3
CD8-positive, alpha-beta memory T cell
7
8
astrocyte
8
4
2
1
foreskin fibroblast
1
2
6
2
4
foreskin keratinocyte
4
11
keratinocyte
2
5
3
2
1
1
1
mononuclear cell
6
7
1
osteoblast
5
2
2
2
3
pancreatic ductal cell
6
3
2
1
1
1
skeletal muscle myoblast
2
2
4
1
2
1
1
1
trophoblast cell
1
5
7
1
T-helper 1 cell
3
3
6
1
fibroblast of lung
4
6
2
1
mammary epithelial cell
1
1
3
3
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
2
1
1
1
1
neutrophil
3
4
2
2
1
1
pancreatic beta cell
8
3
1
1
endothelial cell of hepatic sinusoid
6
6
excitatory neuron
12
pancreatic alpha cell
7
3
1
1
T-helper 17 cell
2
3
5
1
T-helper 2 cell
2
3
5
1
erythroblast
5
2
2
2
pancreatic acinar cell
6
3
1
1
pancreatic delta cell
5
4
1
1
skeletal muscle satellite cell
5
2
2
2
bronchial epithelial cell
1
2
4
1
2
mammary gland epithelial cell
1
4
3
1
1
neurosphere
3
7
fibroblast of cardiac tissue
2
4
3
fibroblast of dermis
4
4
1
mature neutrophil
1
1
7
retinal pigment epithelial cell
3
1
2
1
2
skeletal muscle fiber
5
2
2
dermis blood vessel endothelial cell
2
6
glutamatergic neuron
6
2
kidney tubule cell
2
2
3
1
cardiac muscle cell
1
1
2
1
2
epithelial cell of prostate
3
4
epithelial cell of proximal tubule
1
1
2
1
1
1
fibroblast of mammary gland
1
1
2
1
2
fibroblast of pulmonary artery
1
1
2
1
2
fibroblast of villous mesenchyme
1
1
2
1
2
glomerular endothelial cell
2
1
2
1
1
hepatic stellate cell
3
1
1
1
1
kidney glomerular epithelial cell
2
1
2
1
1
renal cortical epithelial cell
2
1
2
1
1
skin fibroblast
2
3
2
type I muscle cell
3
1
1
1
1
type II muscle cell
3
1
1
1
1
type II pneumocyte
4
2
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
T-cell
2
4
choroid plexus epithelial cell
1
1
2
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
fibroblast of breast
2
4
glomerular visceral epithelial cell
2
1
2
1
kidney epithelial cell
1
1
2
1
1
luminal epithelial cell of mammary gland
2
3
1
memory B cell
4
2
mesenchymal stem cell
2
1
1
1
1
myoepithelial cell of mammary gland
2
4
naive T cell
3
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
1
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
pulmonary artery endothelial cell
1
1
2
1
1
cardiac fibroblast
3
2
CD14-positive, CD16-negative classical monocyte
5
CD4-positive helper T cell
1
2
2
alternatively activated macrophage
1
4
astrocyte of the cerebellum
1
1
2
1
astrocyte of the hippocampus
1
1
2
1
basal cell
2
1
2
epithelial cell of esophagus
1
2
2
foreskin melanocyte
1
4
gabaergic neuron
3
2
inhibitory neuron
5
mast cell
1
1
1
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
pancreatic polypeptide-secreting cell
2
1
1
1
plasma cell
2
1
1
1
skeletal muscle cell
1
1
2
1
smooth muscle cell of the brain vasculature
1
1
2
1
tracheal epithelial cell
1
2
2
activated CD4-positive, alpha-beta T cell
1
2
1
acute myeloid leukemia cell
2
2
adipocyte
2
1
1
aortic adventitial fibroblast
1
1
2
aortic endothelial cell
2
1
1
blood vessel smooth muscle cell
2
2
brain microvascular endothelial cell
1
1
2
cardiac fibroblast
3
1
dermis lymphatic vessel endothelial cell
2
2
endothelial cell of lymphatic vessel
3
1
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
2
fibroblast of the aortic adventitia
1
2
1
inflammatory macrophage
1
3
iris pigment epithelial cell
1
1
2
kidney capillary endothelial cell
1
1
1
1
lung microvascular endothelial cell
1
3
megakaryocyte
2
2
mesothelial cell
2
1
1
non-pigmented ciliary epithelial cell
1
1
2
pancreatic stellate cell
2
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
Ishikawa
1
1
1
T follicular helper cell
2
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD8-positive, alpha-beta T cell
1
1
1
astrocyte of the spinal cord
1
2
blood cell
3
bone marrow cell
2
1
brain pericyte
1
1
1
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
erythroid cell
1
1
1
fibroblast of gingiva
1
2
fibroblast of the conjunctiva
1
2
glial cell
2
1
goblet cell
1
2
leukocyte
2
1
mesangial cell
2
1
microglial cell
1
1
1
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
schwann cell
2
1
smooth muscle cell of the coronary artery
1
1
1
stromal cell of bone marrow
1
2
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
Th2 cell
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
dermis microvascular lymphatic vessel endothelial cell
2
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endothelial cell of coronary artery
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fat cell
1
1
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
luteal cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
meso-epithelial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neural cell
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
vascular associated smooth muscle cell
2
ventricular cardiac muscle cell
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Leydig cell
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alveolar cell type II
1
amniotic epithelial cell
1
aortic smooth muscle cell
1
bone cell
1
bronchial goblet cell
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
helper T cell
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mature eosinophil
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
mesenchymal cell
1
mesenchymal stem cell of adipose
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
naive B cel
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
pericardium fibroblast
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
placental villus capillary endothelial cell
1
progenitor cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
sensory neuron
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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