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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
456
accessible chromatin
354
target gene predictions
296
candidate regulatory elements
207
histone modifications
84
binding sites
69
variant allelic effects
9
caQTL
5
chromatin state
5
eQTL
3
hQTL
2
meQTL
1
other
Date released
327
November, 2021
308
February, 2021
296
September, 2022
177
May, 2021
91
February, 2024
75
May, 2020
56
January, 2021
49
June, 2020
27
October, 2022
16
April, 2020
16
August, 2021
14
January, 2020
13
May, 2022
9
November, 2022
5
August, 2017
5
October, 2019
2
February, 2023
2
January, 2022
2
November, 2020
1
June, 2021
Available data
1491
bed bed3+
546
tsv
388
bigWig
148
bed bed9
106
txt
27
bed bed9+
16
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
1446
Homo sapiens
Biosample type
2115
cell line
1803
tissue
1491
primary cell
345
in vitro differentiated cells
4
stem cell
Organ
445
epithelium
208
connective tissue
vasculature
83
skin of body
71
blood vessel
70
pancreas
52
kidney
41
musculature of body
39
mammary gland
38
liver
35
penis
32
extraembryonic component
31
brain
30
lung
24
heart
23
intestine
20
artery
20
eye
18
embryo
15
vein
14
bronchus
12
bone element
11
adrenal gland
11
bone marrow
11
stomach
10
lymphatic vessel
9
blood
9
bodily fluid
9
esophagus
9
placenta
8
prostate gland
6
large intestine
5
trachea
5
uterus
4
small intestine
3
gonad
3
mouth
3
spinal cord
3
thyroid gland
2
ovary
1
limb
1
thymus
Project
1089
AMP
327
ENCODE
59
T1D
16
LungMap
Genome assembly (visualization)
1487
hg19
472
GRCh38
organ_slims!
vasculature
BIOSAMPLE
TYPE
1491 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
target gene predictions
candidate regulatory elements
histone modifications
binding sites
variant allelic effects
caQTL
chromatin state
eQTL
hQTL
meQTL
other
primary cell
monocyte
18
2
86
1
1
1
CD8-positive, alpha-beta T cell
4
5
7
30
common myeloid progenitor, CD34-positive
14
27
B cell
6
10
14
endothelial cell
15
7
1
2
2
2
1
CD14-positive monocyte
19
8
fibroblast
16
4
1
6
CD4-positive, alpha-beta memory T cell
9
14
pericyte cell
10
10
1
hepatocyte
8
3
1
4
1
2
macrophage
12
3
3
1
smooth muscle cell
9
6
2
1
1
T cell
6
4
4
2
regulatory T cell
5
4
5
1
1
CD8-positive, alpha-beta memory T cell
7
8
astrocyte
8
4
2
1
foreskin fibroblast
1
2
6
2
4
foreskin keratinocyte
4
11
keratinocyte
2
5
3
2
1
1
1
natural killer cell
3
5
6
1
mononuclear cell
6
7
1
osteoblast
5
2
2
2
3
trophoblast cell
1
5
7
1
fibroblast of lung
4
6
2
1
mammary epithelial cell
1
1
3
3
4
1
CD4-positive, alpha-beta T cell
1
3
8
T-helper 1 cell
3
3
6
excitatory neuron
12
pancreatic beta cell
8
3
1
pancreatic ductal cell
5
3
2
1
1
skeletal muscle myoblast
2
2
4
1
2
1
pancreatic alpha cell
7
3
1
T-helper 17 cell
2
3
5
T-helper 2 cell
2
3
5
bronchial epithelial cell
1
2
4
1
2
mammary gland epithelial cell
1
4
3
1
1
neurosphere
3
7
pancreatic delta cell
5
4
1
erythroblast
5
2
2
fibroblast of cardiac tissue
2
4
3
fibroblast of dermis
4
4
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
2
4
1
1
neutrophil
3
4
1
1
pancreatic acinar cell
5
3
1
retinal pigment epithelial cell
3
1
2
1
2
skeletal muscle satellite cell
5
2
2
glutamatergic neuron
6
2
cardiac muscle cell
1
1
2
1
2
epithelial cell of prostate
3
4
fibroblast of mammary gland
1
1
2
1
2
fibroblast of villous mesenchyme
1
1
2
1
2
kidney tubule cell
2
2
3
skeletal muscle fiber
5
2
skin fibroblast
2
3
2
type II pneumocyte
4
2
1
CD1c-positive myeloid dendritic cell
1
1
2
1
1
T-cell
2
4
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
enterocyte
3
3
epithelial cell of proximal tubule
1
1
2
1
1
fibroblast of breast
2
4
hepatic stellate cell
3
1
1
1
luminal epithelial cell of mammary gland
2
3
1
memory B cell
4
2
myoepithelial cell of mammary gland
2
4
naive T cell
3
3
olfactory receptor cell
6
peripheral blood mononuclear cell
4
1
1
renal cortical epithelial cell
2
1
2
1
type I muscle cell
3
1
1
1
type II muscle cell
3
1
1
1
CD4-positive helper T cell
1
2
2
astrocyte of the cerebellum
1
1
2
1
astrocyte of the hippocampus
1
1
2
1
basal cell
2
1
2
epithelial cell of esophagus
1
2
2
foreskin melanocyte
1
4
gabaergic neuron
3
2
glomerular endothelial cell
1
1
2
1
glomerular visceral epithelial cell
2
1
2
inhibitory neuron
5
kidney epithelial cell
1
1
2
1
kidney glomerular epithelial cell
2
1
2
mast cell
1
1
1
1
1
mesenchymal stem cell
2
1
1
1
myofibroblast cell
1
1
3
naive B cell
3
2
naive thymus-derived CD8-positive, alpha-beta T cell
3
2
plasma cell
2
1
1
1
skeletal muscle cell
1
1
2
1
tracheal epithelial cell
1
2
2
acute myeloid leukemia cell
2
2
aortic adventitial fibroblast
1
1
2
blood vessel smooth muscle cell
2
2
enteric smooth muscle cell
2
2
fibroblast of peridontal ligament
1
1
2
iris pigment epithelial cell
1
1
2
megakaryocyte
2
2
mesothelial cell
2
1
1
non-pigmented ciliary epithelial cell
1
1
2
pancreatic polypeptide-secreting cell
2
1
1
preadipocyte
1
2
1
renal epithelial cell
1
1
2
smooth muscle cell of the esophagus
2
2
type I pneumocyte
3
1
Ishikawa
1
1
1
Th1 cell
1
1
1
Th17 cell
1
1
1
activated CD4-positive, alpha-beta T cell
1
2
adipocyte
2
1
astrocyte of the spinal cord
1
2
bone marrow cell
2
1
brain pericyte
1
1
1
cardiac fibroblast
3
ciliated cell
2
1
club cell
2
1
endocardial cell
2
1
enteric neuron
2
1
erythroid cell
1
1
1
fibroblast of gingiva
1
2
fibroblast of the conjunctiva
1
2
goblet cell
1
2
mononuclear cell of bone marrow
1
2
myotube
1
2
naive t cell
1
1
1
neoplastic cell
1
1
1
oligodendrocyte
2
1
oligodendrocyte precursor cell
2
1
pancreatic A cell
3
pancreatic stellate cell
2
1
parietal cell
1
1
1
peptic cell
1
1
1
peripheral blood stem cell
1
1
1
plasmacytoid dendritic cell
2
1
pre-B acute lymphoblastic leukemia cell
2
1
pulmonary interstitial fibroblast
1
1
1
schwann cell
2
1
stromal cell of bone marrow
1
2
thyroid follicular cell
1
1
1
type B pancreatic cell
3
Adipose stromal cell
1
1
B-lymphocyte
1
1
CD34-positive, CD38-negative hematopoietic stem cell
1
1
Muller cell
2
Rhabdoid Tumor of the Kidney
1
1
Schwann cell
2
T follicular helper cell
2
Th2 cell
1
1
activated CD8-positive, alpha-beta T cell
1
1
alveolar macrophage
1
1
amnion mesenchymal stem cell
1
1
amniotic stem cell
1
1
basal cell of epidermis
1
1
cardiac endothelial cell
1
1
cardiac muscle myoblast
1
1
central memory CD8-positive, alpha-beta T cell
2
chronic lymphocytic leukemia cell
1
1
colon goblet cell
1
1
columnar chondrocyte
1
1
conventional dendritic cell
1
1
eccrine cell
1
1
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
epidermal melanocyte
1
1
epithelial cell of amnion
1
1
erythroid progenitor cell
1
1
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
foveolar cell of stomach
1
1
gamma-delta T cell
2
glial cell
2
granular cell of epidermis
1
1
head and neck squamous cell carcinoma
1
1
intestinal tuft cell
1
1
leukemic stem cell
1
1
leukocyte
2
luteal cell
1
1
mammary stem cell
1
1
mantle cell lymphoma cell
2
mature NK T cell
1
1
mature natural killer cell
2
mature neutrophil
1
1
melanocyte
1
1
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
meso-epithelial cell
1
1
microglial cell
1
1
myoepithelial cell
1
1
naive regulatory T cell
2
natural killer cell mediated cytotoxicity
1
1
neuron
2
neuronal stem cell
1
1
non keratinizing barrier epithelial cell
1
1
non-classical monocyte
1
1
pancreatic endocrine cell
1
1
paneth cell
1
1
peripheral blood-derived erythroblast
2
primordial germ cell
1
1
prostate gland cancer cell
1
1
regular atrial cardiac myocyte
1
1
regular cardiac myocyte
1
1
renal proximal tubule cell
1
1
respiratory goblet cell
1
1
skeletal muscle fibroblast
1
1
small cell ovarian carcinoma cell
1
1
small intestine goblet cell
1
1
somatic muscle myotube
1
1
stellate neuron
1
1
stomach neuroendocrine cell
1
1
stromal cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
uterine smooth muscle cell
1
1
ventricular cardiac muscle cell
1
1
retinal pigment epithelial cell
1
B cell, CD19-positive
1
B-Lymphocytes
1
B-cell lymphoma cell
1
CD34-PB
1
CD34-positive, CD38-positive common myeloid progenitor OR CD34-positive, CD38-positive common lymphoid progenitor
1
CD4-Positive T-Lymphocytes
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
CD56-positive, CD161-positive immature natural killer cell
1
Glioblastoma
1
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
Satellite Cells, Skeletal Muscle
1
Stromal Predominant Kidney Wilms Tumor
1
T-cell lymphoma cell
1
acute myeloid leukemia
1
adult endothelial progenitor cell
1
alternatively activated macrophage
1
alveolar cell type II
1
amniotic epithelial cell
1
bone cell
1
bronchial goblet cell
1
cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colorectal cancer
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
enteroendocrine cell
1
erythrocyte
1
extravillous trophoblast
1
fat cell
1
fetal thymocyte
1
fibroblast of arm
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gastric goblet cell
1
granulocyte
1
granulosa cell
1
head and neck neoplasia
1
hepatoblast
1
immature natural killer cell
1
induced T-regulatory cell
1
inflammatory macrophage
1
intestinal epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
lymphocyte of B lineage
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte-erythroid progenitor cell
1
meningioma cell
1
metanephros
1
microglial cell/astrocyte
1
mycosis fungoides
1
myeloid dendritic cell
1
myeloid leukocyte
1
neural cell
1
neural progenitor cell
1
neuroendocrine cell
1
neutrophil progenitor cell
1
non-neuronal cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
parietal epithelial cell
1
peripheral blood
1
peripheral neuron
1
photoreceptor cell
1
placental hematopoietic stem cell
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
retinal bipolar neuron
1
seminoma cell
1
somatic gonadal cell
1
sperm
1
sympathetic neuron
1
trophoblast giant cell
1
umbilical vein endothelial cell
1
undifferentiated pleomorphic sarcoma
1
ureteric bud
1
urinary bladder cancer cell
1
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