Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
267
gene expression
231
accessible chromatin
190
target gene predictions
162
candidate regulatory elements
94
differential activity
90
binding sites
88
chromatin state
53
histone modifications
44
variant allelic effects
18
eQTL
6
Fine-mapped variants
2
caQTL
Date released
289
February, 2021
244
September, 2022
155
September, 2023
127
November, 2021
106
February, 2024
41
May, 2021
38
June, 2020
38
March, 2023
31
August, 2021
25
October, 2022
20
January, 2021
18
January, 2020
18
May, 2020
16
November, 2022
14
February, 2020
14
March, 2020
12
February, 2023
7
April, 2020
7
August, 2017
6
August, 2018
5
October, 2019
3
January, 2022
3
March, 2024
2
May, 2022
2
September, 2018
1
January, 2018
1
July, 2020
1
November, 2019
Available data
777
bed bed3+
347
tsv
181
bigWig
81
bed bed9
78
txt
14
bigBed narrowPeak
6
csv
3
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
1245
Homo sapiens
Biosample type
829
primary cell
241
cell line
148
tissue
27
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
458
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
934
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
875
hg19
308
GRCh38
2
hg18
BIOSAMPLE
TYPE
1245 results
search-icon
table-tab-icon
Clear Filters
gene expression
accessible chromatin
target gene predictions
candidate regulatory elements
differential activity
binding sites
chromatin state
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
15
7
2
1
2
1
2
hepatocyte
13
8
3
1
1
1
4
2
epithelial cell of proximal tubule
16
1
1
2
1
1
1
glomerular endothelial cell
14
2
1
2
1
1
endothelial cell of umbilical vein
2
4
6
2
5
1
+ See 149 more…
cell line
K562
1
23
7
2
7
1
EndoC_BH1
8
8
1
3
1
GM12878
1
8
2
2
2
1
GM06990
1
1
2
2
1
1
GM19240
1
2
1
2
1
1
+ See 36 more…
tissue
adipose tissue
3
2
8
7
1
6
1
4
subcutaneous adipose tissue
5
2
2
1
1
1
6
3
pigmented layer of retina
20
omental fat pad
2
2
2
5
2
2
3
breast epithelium
1
3
5
2
+ See 25 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
1
2
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 5 more…
See all biosamples
Download