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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
159
accessible chromatin
150
gene expression
112
target gene predictions
89
differential activity
47
chromatin state
42
candidate regulatory elements
38
variant allelic effects
11
binding sites
4
histone modifications
2
caQTL
1
eQTL
Date released
February, 2021
155
September, 2023
133
September, 2022
127
November, 2021
60
February, 2024
36
March, 2023
23
August, 2021
20
January, 2021
16
May, 2021
15
June, 2020
13
January, 2020
13
May, 2020
8
February, 2020
7
April, 2020
6
August, 2018
6
October, 2022
5
March, 2020
5
October, 2019
3
August, 2017
2
May, 2022
1
February, 2023
1
July, 2020
Available data
366
bed bed3+
220
tsv
148
bigWig
44
bed bed9
12
txt
11
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
xls
2
bigBed bed9
Organism
655
Homo sapiens
Biosample type
655
primary cell
97
tissue
29
cell line
20
in vitro differentiated cells
Organ
655
epithelium
227
connective tissue
216
kidney
141
vasculature
119
pancreas
94
blood vessel
72
skin of body
56
liver
41
musculature of body
34
mammary gland
32
extraembryonic component
30
brain
29
lung
25
heart
22
intestine
22
penis
21
artery
18
eye
17
embryo
15
lymphatic vessel
15
vein
11
adrenal gland
11
bronchus
11
stomach
9
esophagus
8
bone element
8
bone marrow
8
prostate gland
7
placenta
6
large intestine
4
gonad
4
small intestine
3
mouth
3
spinal cord
3
thyroid gland
3
uterus
2
ovary
1
adipose tissue
1
blood
1
bodily fluid
1
limb
1
pericardium
1
testis
1
thymus
1
trachea
Project
346
AMP
155
KPMP
127
ENCODE
20
T1D
7
LungMap
Genome assembly (visualization)
412
hg19
218
GRCh38
month_released!
February, 2021
BIOSAMPLE
TYPE
655 results
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Clear Filters
accessible chromatin
gene expression
target gene predictions
differential activity
chromatin state
candidate regulatory elements
variant allelic effects
binding sites
histone modifications
caQTL
eQTL
primary cell
endothelial cell
15
5
7
2
2
1
hepatocyte
8
10
3
1
1
2
3
pancreatic beta cell
8
3
2
3
1
endothelial cell of hepatic sinusoid
6
4
6
pancreatic acinar cell
6
3
3
3
1
pancreatic delta cell
5
3
4
3
1
pancreatic ductal cell
6
3
3
3
1
endothelial cell of umbilical vein
2
4
5
2
1
1
pancreatic alpha cell
7
3
2
3
keratinocyte
2
5
3
2
1
foreskin keratinocyte
4
4
4
mammary gland epithelial cell
1
4
3
3
1
kidney tubule cell
2
1
2
2
2
epithelial cell of proximal tubule
1
2
1
1
1
1
1
glomerular endothelial cell
2
2
1
1
1
1
bronchial epithelial cell
1
2
2
2
epithelial cell of prostate
3
2
2
kidney glomerular epithelial cell
2
1
1
1
1
1
luminal epithelial cell of mammary gland
2
3
1
1
renal cortical epithelial cell
2
1
1
1
1
1
retinal pigment epithelial cell
3
1
1
1
1
type II pneumocyte
4
2
1
choroid plexus epithelial cell
1
1
1
1
1
1
colon epithelial cell
3
3
cortical cell of adrenal gland
3
2
1
dermis blood vessel endothelial cell
2
2
2
dermis lymphatic vessel endothelial cell
2
2
2
enterocyte
3
3
glomerular visceral epithelial cell
2
1
1
1
1
kidney epithelial cell
1
1
1
1
1
1
myoepithelial cell of mammary gland
2
2
2
pancreatic polypeptide-secreting cell
2
2
1
1
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
3
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
3
2
Afferent / Efferent Arteriole Endothelial Cell
3
2
Connecting Tubule Cell
3
2
Cortical Thick Ascending Limb Cell
3
2
Cycling Endothelial Cell
3
2
Cycling Epithelial Cell
3
2
Degenerative Connecting Tubule Cell
3
2
Degenerative Connecting Tubule Cell / Principal Cell
3
2
Degenerative Cortical Thick Ascending Limb Cell
3
2
Degenerative Distal Convoluted Tubule Cell
3
2
Degenerative Intercalated Cell Type A
3
2
Degenerative Peritubular Capillary Endothelial Cell
3
2
Degenerative Principal Cell
3
2
Degenerative Proximal Tubule Epithelial Cell
3
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
3
2
Descending Thin Limb Cell Type 1
3
2
Distal Convoluted Tubule Cell Type 1
3
2
Glomerular Capillary Endothelial Cell
3
2
Intercalated Cell Type A
3
2
Intercalated Cell Type B
3
2
Lymphatic Endothelial Cell
3
2
Medullary Thick Ascending Limb Cell
3
2
Parietal Epithelial Cell
3
2
Peritubular Capillary Endothelial Cell
3
2
Podocyte
3
2
Principal Cell
3
2
Proximal Tubule Epithelial Cell Segment 1 and 2
3
2
Proximal Tubule Epithelial Cell Segment 3
3
2
Transitional Principal-Intercalated Cell
3
2
epithelial cell of esophagus
1
1
1
2
kidney capillary endothelial cell
1
1
1
1
1
pancreatic endothelial cell
1
1
3
brain microvascular endothelial cell
1
1
1
1
endothelial cell of lymphatic vessel
3
1
iris pigment epithelial cell
1
1
1
1
mammary epithelial cell
1
1
1
1
mesothelial cell
2
1
1
non-pigmented ciliary epithelial cell
1
1
1
1
pancreatic alpha+beta cell
1
3
pancreatic cycling alpha cell
1
3
pancreatic gamma+epsilon cell
1
3
pulmonary artery endothelial cell
1
1
1
1
type I pneumocyte
3
1
aortic endothelial cell
2
1
club cell
2
1
endocardial cell
2
1
epidermal melanocyte
1
1
1
epithelial cell of amnion
1
1
1
goblet cell
1
2
lung microvascular endothelial cell
1
1
1
pancreatic A cell
3
parietal cell
1
1
1
peptic cell
1
1
1
thyroid follicular cell
1
1
1
type B pancreatic cell
3
basal cell of epidermis
1
1
capillary endothelial cell
2
cardiac endothelial cell
1
1
eccrine cell
1
1
enterochromaffin-like cell
1
1
enterocyte of epithelium of small intestine
1
1
foveolar cell of stomach
1
1
granular cell of epidermis
1
1
kidney distal convoluted tubule epithelial cell
1
1
myoepithelial cell
1
1
non keratinizing barrier epithelial cell
1
1
paneth cell
1
1
renal principal cell
1
1
respiratory goblet cell
1
1
small intestine goblet cell
1
1
stomach neuroendocrine cell
1
1
type I cell of adrenal cortex
1
1
type II cell of adrenal cortex
1
1
brain microvascular endothelial cell
1
retinal pigment epithelial cell
1
Liver fetal (hepatocyte)
1
bronchial goblet cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
endothelial cell of coronary artery
1
enteroendocrine cell
1
gastric goblet cell
1
granulosa cell
1
kidney connecting tubule epithelial cell
1
kidney loop of Henle ascending limb epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney loop of Henle thin descending limb epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of prostatic duct
1
lung neuroendocrine cell
1
neuroendocrine cell
1
parietal epithelial cell
1
placental villus capillary endothelial cell
1
renal alpha-intercalated cell
1
renal beta-intercalated cell
1
renal intercalated cell
1
tracheal epithelial cell
1
ureteric bud
1
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