Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
285
gene expression
271
candidate regulatory elements
239
accessible chromatin
205
target gene predictions
135
chromatin state
94
differential activity
50
variant allelic effects
47
binding sites
33
histone modifications
6
eQTL
2
caQTL
Date released
391
September, 2022
314
February, 2021
160
September, 2023
128
November, 2021
76
February, 2024
38
March, 2023
36
May, 2021
35
August, 2021
34
June, 2020
27
May, 2020
20
January, 2020
20
January, 2021
15
November, 2022
12
February, 2023
10
February, 2020
10
March, 2020
7
April, 2020
7
October, 2022
6
August, 2018
5
March, 2024
5
October, 2019
3
August, 2017
2
January, 2022
2
May, 2022
1
April, 2019
1
July, 2020
1
May, 2019
1
November, 2019
Available data
844
bed bed3+
358
tsv
195
bigWig
132
bed bed9
90
txt
14
bigBed narrowPeak
6
csv
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
1367
Homo sapiens
Biosample type
841
primary cell
417
tissue
82
cell line
27
in vitro differentiated cells
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1050
AMP
160
KPMP
128
ENCODE
20
T1D
7
LungMap
2
community
Genome assembly (visualization)
979
hg19
335
GRCh38
BIOSAMPLE
TYPE
1367 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
accessible chromatin
target gene predictions
chromatin state
differential activity
variant allelic effects
binding sites
histone modifications
eQTL
caQTL
primary cell
endothelial cell
9
15
7
2
2
1
1
2
hepatocyte
13
1
8
3
1
2
1
4
epithelial cell of proximal tubule
16
2
1
1
1
1
1
glomerular endothelial cell
14
2
2
1
1
1
endothelial cell of umbilical vein
6
2
4
5
1
2
+ See 154 more…
tissue
kidney
7
29
10
14
16
1
1
2
1
adrenal gland
1
28
1
17
14
1
right kidney
20
1
10
10
1
renal cortex interstitium
20
1
9
9
1
renal pelvis
19
2
9
9
1
+ See 30 more…
cell line
EndoC_BH1
8
8
1
3
1
HEK293
3
1
1
1
2
1
ACHN
2
1
1
1
Caki2
2
1
1
1
RCC 7860
2
1
1
1
+ See 17 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hepatocyte
2
1
1
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 5 more…
See all biosamples
Download