Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
142
target gene predictions
130
candidate regulatory elements
84
chromatin state
56
accessible chromatin
55
histone modifications
42
Fine-mapped variants
35
eQTL
29
gene expression
26
binding sites
21
variant allelic effects
2
caQTL
2
differential activity
Date released
213
September, 2022
135
February, 2021
52
February, 2024
44
March, 2020
33
January, 2020
26
June, 2020
24
May, 2020
22
February, 2020
22
January, 2022
15
May, 2021
8
October, 2022
8
September, 2023
6
August, 2017
5
May, 2019
3
February, 2023
3
March, 2024
3
November, 2019
2
November, 2021
Available data
431
bed bed3+
85
tsv
78
bed bed9
31
bigWig
8
bigBed bed9
Organism
623
Homo sapiens
Biosample type
404
tissue
146
cell line
69
primary cell
4
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
617
AMP
5
KPMP
2
ENCODE
Genome assembly (visualization)
563
hg19
238
GRCh38
BIOSAMPLE
TYPE
624 results
search-icon
table-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
histone modifications
Fine-mapped variants
eQTL
gene expression
binding sites
variant allelic effects
caQTL
differential activity
tissue
brain
16
29
18
2
3
2
1
1
1
caudate nucleus
3
5
4
2
1
3
2
1
1
coronary artery
3
3
3
3
3
2
1
2
1
tibial artery
2
3
3
3
3
2
1
2
substantia nigra
2
5
3
1
3
3
1
+ See 64 more…
cell line
HeLa-S3
55
5
3
1
SK-N-DZ
2
4
2
1
1
SK-N-SH
3
4
2
1
pituitary stalk
10
SK-N-MC
1
2
1
1
1
2
+ See 12 more…
primary cell
fibroblast of pulmonary artery
1
2
1
1
1
2
choroid plexus epithelial cell
1
2
1
1
1
1
pulmonary artery endothelial cell
1
2
1
1
1
1
astrocyte of the cerebellum
1
2
1
1
1
astrocyte of the hippocampus
1
2
1
1
1
+ See 12 more…
in vitro differentiated cells
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download