Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
379
candidate regulatory elements
258
target gene predictions
218
chromatin state
89
accessible chromatin
78
histone modifications
72
binding sites
45
Fine-mapped variants
37
eQTL
26
gene expression
26
variant allelic effects
Date released
597
September, 2022
308
February, 2021
48
March, 2020
45
June, 2020
36
January, 2020
30
February, 2024
29
May, 2020
29
October, 2022
24
February, 2020
22
May, 2021
21
January, 2022
9
August, 2017
9
November, 2021
6
May, 2019
4
March, 2024
3
April, 2020
3
November, 2019
3
September, 2023
2
August, 2021
Available data
904
bed bed3+
209
bed bed9
86
tsv
44
bigWig
10
bigBed bed9
Organism
1227
Homo sapiens
Biosample type
769
tissue
375
cell line
79
primary cell
4
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
1216
AMP
9
ENCODE
3
LungMap
Genome assembly (visualization)
1175
hg19
361
GRCh38
BIOSAMPLE
TYPE
1228 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
accessible chromatin
histone modifications
binding sites
Fine-mapped variants
eQTL
gene expression
variant allelic effects
tissue
brain
29
16
18
2
3
1
2
1
1
lung
33
17
16
1
1
muscle of arm
33
16
16
1
1
muscle of leg
27
14
15
2
left lung
26
13
13
+ See 85 more…
cell line
A549
21
19
18
1
1
2
K562
7
23
7
1
1
2
GM12878
2
8
2
1
1
2
SK-N-DZ
4
2
2
1
1
SK-N-SH
4
3
2
1
+ See 46 more…
primary cell
fibroblast of lung
6
4
4
2
choroid plexus epithelial cell
2
1
1
1
1
1
type II pneumocyte
2
4
1
astrocyte of the cerebellum
2
1
1
1
1
astrocyte of the hippocampus
2
1
1
1
1
+ See 13 more…
in vitro differentiated cells
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download