Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
206
gene expression
104
candidate regulatory elements
67
accessible chromatin
56
differential activity
16
binding sites
16
variant allelic effects
13
histone modifications
5
target gene predictions
4
eQTL
3
chromatin state
Date released
September, 2022
235
February, 2021
140
September, 2023
28
August, 2021
21
June, 2020
21
May, 2020
14
January, 2020
9
February, 2020
5
November, 2021
4
March, 2020
3
October, 2022
2
January, 2021
2
March, 2024
1
April, 2019
1
February, 2024
1
January, 2022
1
May, 2019
1
May, 2021
1
May, 2022
Available data
255
tsv
217
bed bed3+
87
txt
47
bigWig
2
bed bed9
2
bigBed bed9
1
bed bed9+
Organism
490
Homo sapiens
Biosample type
294
primary cell
152
tissue
43
cell line
1
in vitro differentiated cells
Organ
798
epithelium
427
kidney
340
connective tissue
286
brain
233
pancreas
191
vasculature
171
musculature of body
147
heart
144
blood vessel
143
bodily fluid
138
blood
134
embryo
125
intestine
110
liver
106
limb
102
skin of body
101
lung
82
eye
76
large intestine
71
uterus
65
adipose tissue
54
artery
50
stomach
47
bone element
47
extraembryonic component
45
mammary gland
39
prostate gland
38
lymph node
34
penis
31
adrenal gland
27
small intestine
26
gonad
25
placenta
25
ureter
24
esophagus
19
spinal cord
17
vein
16
nerve
16
spleen
16
thymus
15
lymphatic vessel
14
testis
13
pituitary gland
11
ovary
11
thyroid gland
10
bone marrow
10
bronchus
9
lymphoid tissue
9
skeleton
7
breast
7
mouth
5
trachea
4
tongue
4
urinary bladder
4
vagina
1
nose
1
pericardium
Project
343
AMP
140
KPMP
5
ENCODE
2
T1D
Genome assembly (visualization)
221
hg19
40
GRCh38
month_released!
September, 2022
BIOSAMPLE
TYPE
490 results
search-icon
table-tab-icon
Clear Filters
gene expression
candidate regulatory elements
accessible chromatin
differential activity
binding sites
variant allelic effects
histone modifications
target gene predictions
eQTL
chromatin state
primary cell
epithelial cell of proximal tubule
16
1
1
1
1
glomerular endothelial cell
14
1
2
1
glomerular visceral epithelial cell
5
1
2
kidney interstitial cell
6
1
kidney loop of Henle thin ascending limb epithelial cell
7
+ See 70 more…
tissue
kidney
7
15
10
1
1
2
1
2
thymus
9
1
1
1
3
renal cortex interstitium
11
1
1
renal pelvis
10
2
1
right kidney
10
1
1
+ See 26 more…
cell line
HEK293
2
1
2
1
MG63
1
1
1
1
U2OS
1
2
1
OCI-LY1
1
1
1
SJSA1
1
1
1
+ See 17 more…
in vitro differentiated cells
renal cell carcinoma
1
See all biosamples
Download