Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
172
candidate regulatory elements
140
target gene predictions
113
accessible chromatin
106
chromatin state
76
histone modifications
67
binding sites
36
Fine-mapped variants
32
eQTL
21
gene expression
19
variant allelic effects
Date released
276
September, 2022
197
February, 2021
39
June, 2020
38
March, 2020
31
January, 2020
30
February, 2024
27
October, 2022
24
February, 2023
22
November, 2022
21
May, 2020
20
February, 2020
18
January, 2022
15
May, 2021
8
August, 2017
4
May, 2019
4
November, 2021
3
September, 2023
2
August, 2021
2
March, 2024
1
November, 2019
Available data
588
bed bed3+
98
bed bed9
70
tsv
57
bigWig
6
bigBed bed9
Organism
781
Homo sapiens
Biosample type
422
tissue
282
cell line
67
primary cell
10
in vitro differentiated cells
1
stem cell
Organ
949
epithelium
652
kidney
466
brain
460
connective tissue
375
musculature of body
311
lung
289
intestine
277
pancreas
266
vasculature
255
heart
244
limb
218
bodily fluid
215
embryo
207
blood
204
blood vessel
204
skin of body
174
large intestine
156
liver
146
extraembryonic component
119
stomach
109
eye
89
adipose tissue
89
bone element
87
mammary gland
84
small intestine
83
uterus
78
prostate gland
75
artery
73
adrenal gland
73
placenta
64
penis
64
ureter
62
lymph node
50
gonad
49
thymus
45
esophagus
43
spinal cord
34
spleen
26
testis
25
nerve
24
lymphoid tissue
23
ovary
23
thyroid gland
23
vein
21
lymphatic vessel
19
mouth
18
skeleton
16
bronchus
13
bone marrow
13
breast
13
pituitary gland
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
778
AMP
4
ENCODE
Genome assembly (visualization)
736
hg19
219
GRCh38
BIOSAMPLE
TYPE
782 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
chromatin state
histone modifications
binding sites
Fine-mapped variants
eQTL
gene expression
variant allelic effects
tissue
brain
29
16
2
18
3
1
2
1
1
retina
6
3
23
3
1
1
1
1
1
caudate nucleus
5
3
2
4
1
3
2
1
1
pigmented layer of retina
20
substantia nigra
5
2
3
1
3
3
1
+ See 62 more…
cell line
K562
7
23
1
7
1
2
GM12878
2
8
1
2
1
2
SK-N-DZ
4
2
1
2
1
SK-N-SH
4
3
2
1
pituitary stalk
10
+ See 40 more…
primary cell
retinal pigment epithelial cell
2
1
3
1
1
2
choroid plexus epithelial cell
2
1
1
1
1
1
astrocyte of the cerebellum
2
1
1
1
1
astrocyte of the hippocampus
2
1
1
1
1
peripheral blood mononuclear cell
4
1
1
+ See 12 more…
in vitro differentiated cells
retinal pigment epithelial cell
6
hippocampal neuron
1
1
ESC dervived hypothalamic neuron (arcuate nucleus)
1
ESC dervived hypothalamic progenitor (arcuate nucleus)
1
stem cell
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download